SBU-BMI wsinfer issues - Githubissues

SBU-BMI / wsinfer

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

https://wsinfer.readthedocs.io

Apache License 2.0

54 stars 9 forks source link

issues

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CTransPath

#223 masudalynn0704 closed 3 weeks ago
1
results not ideal

#222 TingTingShao opened 1 month ago
6
Use your own model

#221 Nazim0001 opened 3 months ago
8
[BUG] tosbu expects old-stype outputs directory and missing keys

#220 kaczmarj opened 4 months ago
0
[STYLE] use ruff in lieu of black/flake8/isort + add pre-commit

#219 kaczmarj closed 4 months ago
0
Cleanup + add strided patches

#218 kaczmarj closed 4 months ago
0
Add segmentation options to wsinfer run

#217 kaczmarj closed 4 months ago
0
[FEAT] check that thumbnail is an RGB image

#216 kaczmarj closed 4 months ago
0
[STYLE] format with black

#215 kaczmarj closed 4 months ago
0
[bug] symlinked file names can cause problems

#214 kaczmarj closed 4 months ago
0
wsinfer.errors.CannotReadSpacing

#213 jeginderof closed 4 months ago
8
Report of Multiple OpenMP Runtime Instances Linked in Software Installation on Windows 10

#212 jeginderof closed 5 months ago
7
fix types when using cv2

#211 kaczmarj closed 6 months ago
0
types for opencv causing errors

#210 kaczmarj closed 6 months ago
0
Feat/qupath

#209 swaradgat19 closed 6 months ago
19
Fix/recursion limit

#208 swaradgat19 closed 7 months ago
5
Handle recursionlimit error dynamically

#207 swaradgat19 closed 7 months ago
2
backwards compatibility of output directory

#206 kaczmarj closed 4 months ago
1
results directory not found if patching fails on all slides

#205 kaczmarj closed 4 months ago
0
set chunksize to some value greater than 1 in geojson conversion

#204 kaczmarj closed 4 months ago
5
[TEST] test that openslide/tiffslide pad tiles on slide edges

#203 kaczmarj closed 4 months ago
0
[ENH] add strided tiles

#202 kaczmarj closed 4 months ago
3
[DOCS] add video walkthrough to user guide + update version switcher

#201 kaczmarj closed 7 months ago
0
clarify docs on gpu install + explain model output directory

#200 kaczmarj closed 7 months ago
0
test that openslide.OpenSlide is available

#199 kaczmarj closed 7 months ago
0
improve docs on how to install GPU dependencies for PyTorch

#198 kaczmarj closed 7 months ago
0
add python 3.12 to ci

#197 kaczmarj closed 4 months ago
1
test openslide import more strictly

#196 kaczmarj closed 7 months ago
0
bug: it is possible for wsi loader to have a length of 0 (if no patches are detected)

#195 kaczmarj closed 4 months ago
1
add CITATION.cff

#194 kaczmarj closed 4 months ago
1
test python 3.12 when it is released

#193 kaczmarj closed 4 months ago
0
RecursionError: maximum recursion depth exceeded in comparison

#192 jecaJeca closed 7 months ago
9
Fix/geojson command

#191 swaradgat19 closed 9 months ago
10
restrict wsi_dir.glob to files

#190 xalexalex closed 9 months ago
2
MIRAX (.mrxs) support

#189 xalexalex closed 9 months ago
3
check that page0 is TiffPage inst

#188 kaczmarj closed 9 months ago
0
add favicon to docs

#187 kaczmarj closed 9 months ago
0
conversion to SBU format is broken

#186 kaczmarj closed 4 months ago
8
some arguments in data class are unused

#185 kaczmarj closed 4 months ago
0
Generating geojson files on run command

#184 swaradgat19 closed 9 months ago
14
consider making releases automatically with intuit's 'auto'

#183 kaczmarj closed 11 months ago
3
clone batch_coords tensor to prevent Too many open files error

#182 kaczmarj closed 11 months ago
0
always create geojson outputs with 'wsinfer run'

#181 kaczmarj closed 9 months ago
18
skip openslide/tiffslide tests if those backends not available

#180 kaczmarj closed 11 months ago
0
changed GeoJSON format

#179 swaradgat19 closed 11 months ago
22
geojson features from qupath have different schema than our own

#178 kaczmarj closed 11 months ago
0
Gracefully handle missing backends

#177 kaczmarj closed 11 months ago
0
fixed togeojson and tosbu commands

#176 swaradgat19 closed 11 months ago
0
Incorrect command to convert model outputs to GeoJson in documentation

#175 swaradgat19 closed 11 months ago
4
add link to github repo in navbar

#174 kaczmarj closed 11 months ago
0