SBU-BMI / wsinfer

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
https://wsinfer.readthedocs.io
Apache License 2.0
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add strided patch predictions #106

Closed kaczmarj closed 8 months ago

kaczmarj commented 1 year ago

we should allow users to predict on overlapping patches. this could improve outputs.

to do this, we can get a running sum of predictions in each region and also maintain a count of how many times each region is used. then we can divide the sum by the count to get the mean softmax probabilities for the regions.

kaczmarj commented 8 months ago

replaced by #202