SBU-BMI / wsinfer

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
https://wsinfer.readthedocs.io
Apache License 2.0
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[REF] use custom patching implementation and use Apache 2.0 license #153

Closed kaczmarj closed 1 year ago

kaczmarj commented 1 year ago

Our original patching algorithm used code from CLAM, which is licensed under GPL. This PR removes CLAM code and replaces it with a custom implementation.

The saved HDF5 file with patch coordinates is similar to that of CLAM to be inter-operable with patches that one might create using CLAM.

fixes #148

This is an image of model outputs in a TCGA BRCA image.

image