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SBU-BMI
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wsinfer
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
https://wsinfer.readthedocs.io
Apache License 2.0
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only use specified backend (or tifffile) to read mpp
#227
kaczmarj
closed
1 month ago
0
fix backend setting
#226
kaczmarj
closed
1 month ago
0
Backend set to tiffslide, but openslide is used
#225
vthorsson
opened
1 month ago
7
[DOC] add disclaimer that this project is for academic research purposes only
#224
kaczmarj
closed
1 month ago
0
CTransPath
#223
masudalynn0704
closed
2 months ago
1
results not ideal
#222
TingTingShao
opened
2 months ago
6
Use your own model
#221
Nazim0001
opened
5 months ago
8
[BUG] tosbu expects old-stype outputs directory and missing keys
#220
kaczmarj
opened
6 months ago
0
[STYLE] use ruff in lieu of black/flake8/isort + add pre-commit
#219
kaczmarj
closed
6 months ago
0
Cleanup + add strided patches
#218
kaczmarj
closed
6 months ago
0
Add segmentation options to wsinfer run
#217
kaczmarj
closed
6 months ago
0
[FEAT] check that thumbnail is an RGB image
#216
kaczmarj
closed
6 months ago
0
[STYLE] format with black
#215
kaczmarj
closed
6 months ago
0
[bug] symlinked file names can cause problems
#214
kaczmarj
closed
6 months ago
0
wsinfer.errors.CannotReadSpacing
#213
jeginderof
closed
6 months ago
8
Report of Multiple OpenMP Runtime Instances Linked in Software Installation on Windows 10
#212
jeginderof
closed
6 months ago
7
fix types when using cv2
#211
kaczmarj
closed
7 months ago
0
types for opencv causing errors
#210
kaczmarj
closed
7 months ago
0
Feat/qupath
#209
swaradgat19
closed
7 months ago
19
Fix/recursion limit
#208
swaradgat19
closed
8 months ago
5
Handle recursionlimit error dynamically
#207
swaradgat19
closed
8 months ago
2
backwards compatibility of output directory
#206
kaczmarj
closed
6 months ago
1
results directory not found if patching fails on all slides
#205
kaczmarj
closed
6 months ago
0
set chunksize to some value greater than 1 in geojson conversion
#204
kaczmarj
closed
6 months ago
5
[TEST] test that openslide/tiffslide pad tiles on slide edges
#203
kaczmarj
closed
6 months ago
0
[ENH] add strided tiles
#202
kaczmarj
closed
6 months ago
3
[DOCS] add video walkthrough to user guide + update version switcher
#201
kaczmarj
closed
9 months ago
0
clarify docs on gpu install + explain model output directory
#200
kaczmarj
closed
9 months ago
0
test that openslide.OpenSlide is available
#199
kaczmarj
closed
9 months ago
0
improve docs on how to install GPU dependencies for PyTorch
#198
kaczmarj
closed
9 months ago
0
add python 3.12 to ci
#197
kaczmarj
closed
6 months ago
1
test openslide import more strictly
#196
kaczmarj
closed
9 months ago
0
bug: it is possible for wsi loader to have a length of 0 (if no patches are detected)
#195
kaczmarj
closed
6 months ago
1
add CITATION.cff
#194
kaczmarj
closed
6 months ago
1
test python 3.12 when it is released
#193
kaczmarj
closed
6 months ago
0
RecursionError: maximum recursion depth exceeded in comparison
#192
jecaJeca
closed
8 months ago
9
Fix/geojson command
#191
swaradgat19
closed
11 months ago
10
restrict wsi_dir.glob to files
#190
xalexalex
closed
11 months ago
2
MIRAX (.mrxs) support
#189
xalexalex
closed
11 months ago
3
check that page0 is TiffPage inst
#188
kaczmarj
closed
11 months ago
0
add favicon to docs
#187
kaczmarj
closed
11 months ago
0
conversion to SBU format is broken
#186
kaczmarj
closed
6 months ago
8
some arguments in data class are unused
#185
kaczmarj
closed
6 months ago
0
Generating geojson files on run command
#184
swaradgat19
closed
11 months ago
14
consider making releases automatically with intuit's 'auto'
#183
kaczmarj
closed
1 year ago
3
clone batch_coords tensor to prevent Too many open files error
#182
kaczmarj
closed
1 year ago
0
always create geojson outputs with 'wsinfer run'
#181
kaczmarj
closed
11 months ago
18
skip openslide/tiffslide tests if those backends not available
#180
kaczmarj
closed
1 year ago
0
changed GeoJSON format
#179
swaradgat19
closed
1 year ago
22
geojson features from qupath have different schema than our own
#178
kaczmarj
closed
1 year ago
0
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