If I understood correctly, the function "cluster_analysis" uses edgeR's GLM functionality to calculate differentially expressed genes and edgeR, by default, does not support parallel processing. As a result, I experienced that this function could take several hours to finish, depending on the input size. Do you have any suggestions to speed up this step?
Hi,
Thank you for creating this useful analysis tool.
If I understood correctly, the function "cluster_analysis" uses edgeR's GLM functionality to calculate differentially expressed genes and edgeR, by default, does not support parallel processing. As a result, I experienced that this function could take several hours to finish, depending on the input size. Do you have any suggestions to speed up this step?
Thanks,
Erdogan