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SCA-IRCM / SingleCellSignalR_v1

R package
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cannot allocate vector of size 180.0 Mb #24

Closed torumatsuura closed 3 years ago

torumatsuura commented 3 years ago

Dear whom it may concern,

When I analyze my data, R says like below:

clust <- clustering(data = data,n = 10, method = "simlr") Estimating the number of clusters Error: cannot allocate vector of size 180.0 Mb

Should I reduce the size of my data? If so, I like to know how to reduce the size. Any help would be appreciated. Best regards,

Toru

torumatsuura commented 3 years ago

In addition to the comment attached in previous message, R says like below: In addition: Warning messages: 1: In for (i in 1L:d2) { : closing unused connection 10 (<-DESKTOP-GDM6FQI:11473) 2: In for (i in 1L:d2) { : closing unused connection 9 (<-DESKTOP-GDM6FQI:11473) 3: In for (i in 1L:d2) { : closing unused connection 8 (<-DESKTOP-GDM6FQI:11473) 4: In for (i in 1L:d2) { : closing unused connection 7 (<-DESKTOP-GDM6FQI:11473) 5: In for (i in 1L:d2) { : closing unused connection 6 (<-DESKTOP-GDM6FQI:11473) 6: In for (i in 1L:d2) { : closing unused connection 5 (<-DESKTOP-GDM6FQI:11473) 7: In for (i in 1L:d2) { : closing unused connection 4 (<-DESKTOP-GDM6FQI:11473)

torumatsuura commented 3 years ago

Increasing memory limits (16000->100000) makes the program to work. memory.limit(size=100000)

SCA-IRCM commented 3 years ago

Hi, It seems that you solved your issue! Well done. Don't hesitate to contact me if you have any other question.

Thanks for using SingleCellSignalR!

SCA

torumatsuura commented 3 years ago

Thanks.