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SCA-IRCM / SingleCellSignalR_v1

R package
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Problem using `visualize(signal)` when using with Seurat #3

Closed singcell closed 4 years ago

singcell commented 4 years ago

Thank you for making such a nice tool. I could run example_dataset.txt successfully using your provided code in manual section.

However, using my dataset when I use SingleCellSignalR with Seurat tool as mentioned in Supplementary Box 2 of your publication I get error message. It all works fine until it comes to visualize(signal) step. I get Error in inter[[i]] : subscript out of bounds message when I run visualize(signal) step. I tried using visualize(inter = signal) without success. Please ket me know where things are going wrong.

Thank you

singcell commented 4 years ago

Never mind, I was using mouse data. Designating species fixed the problem.