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SCA-IRCM / SingleCellSignalR_v1

R package
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Failed running intra_network #6

Closed DouberZ closed 4 years ago

DouberZ commented 4 years ago

Hi, I attempted running intra_network, however, following error information returned.

Error in as.igraph.vs(graph, from) : Invalid vertex names 4. stop("Invalid vertex names") 3. as.igraph.vs(graph, from) 2. shortest_paths(g.net.tmp, receptors, V(g.net.tmp)) 1. intra_network(goi = "Egfr", coi = "N1", data = input, genes = rownames(input), cluster = as.numeric(Idents(temp)), c.names = cnames, species = "mus musculus", write = FALSE, signal = signal)

Before, I run inter_network successfully with this: inter.net <- inter_network(data = input, genes = rownames(input), cluster = as.numeric(Idents(temp)), signal = signal, c.names = cnames, species = "mus musculus", write = FALSE)

Looking forward to your reply.

Bo

SCA-IRCM commented 4 years ago

Hi, The problem is fixed now. Make sure you re-install version 0.0.1.6 of the package and it will work. Thank's for bringing this up.

SCA

DouberZ commented 4 years ago

Thank you very much. Everything goes well now.