Closed singcell closed 4 years ago
Hi, I advise you not to combine the pre-processing steps from different tools (Seurat and SingleCellSignalR). If you want to use Seurat for pre-processing, do the log normalization steps before extracting the counts matrix (see https://github.com/SCA-IRCM/Demo/blob/master/example_seurat.R) to feed the clustering function of SingleCellSignalR. Thank you for using SingleCellSignalR.
SCA
I am using matrix file generated by 'Read10x' function to input in
data_prepare
. I get followingdata_prepare
output:looks like previous step log-normalized and If I overlook this warning message and go over to
clustering
command, I get following Error:Would it be possible for you to diagnose the problem?
Thank you.