search

SCBI-ForestGEO / McGregor_climate-sensitivity-variation

repository for linking the climate sensitity of tree growth (derived from cores) to functional traits
0 stars 0 forks source link

references #128

Closed teixeirak closed 3 years ago

teixeirak commented 3 years ago

@mcgregorian1 , for references, we need to:

teixeirak commented 3 years ago

Note that I'm still looking to fill in a few more references.

mcgregorian1 commented 3 years ago

That's fine, I'm going to do more tonight.

Also it shouldn't matter for me to be the last one to knit wrt the R packages? The packages.bib file is available to all.

On Wed, Jul 22, 2020 at 12:00 PM Kristina Anderson-Teixeira < notifications@github.com> wrote:

Note that I'm still looking to fill in a few more references.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/SCBI-ForestGEO/McGregor_climate-sensitivity-variation/issues/128#issuecomment-662538507, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJNRBEKJZMV3C7Z3VR2YZ4TR44ELTANCNFSM4PE3JKAA .

--

Ian McGregor

Ph.D. Student | Center for Geospatial Analytics

He/Him/His

College of Natural Resources

Jordan Hall 4120 | Campus Box 7106

North Carolina State University

2800 Faucette Dr.

Raleigh, NC 27695 USA imcgreg@ncsu.edu | 714-864-1005 | geospatial.ncsu.edu

teixeirak commented 3 years ago

Also it shouldn't matter for me to be the last one to knit wrt the R packages? The packages.bib file is available to all.

hmmm... for some reason it just generates question marks for a lot of packages when I try to knit. I think I'd have to have all the packages installed. Or maybe I'm doing something wrong?

mcgregorian1 commented 3 years ago

Ohh ok that might be it.

On Wed, Jul 22, 2020 at 2:02 PM Kristina Anderson-Teixeira < notifications@github.com> wrote:

Also it shouldn't matter for me to be the last one to knit wrt the R packages? The packages.bib file is available to all.

hmmm... for some reason it just generates question marks for a lot of packages when I try to knit. I think I'd have to have all the packages installed. Or maybe I'm doing something wrong?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/SCBI-ForestGEO/McGregor_climate-sensitivity-variation/issues/128#issuecomment-662601437, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJNRBEPFWVNVFOWBCPTY3RTR44SUHANCNFSM4PE3JKAA .

--

Ian McGregor

Ph.D. Student | Center for Geospatial Analytics

He/Him/His

College of Natural Resources

Jordan Hall 4120 | Campus Box 7106

North Carolina State University

2800 Faucette Dr.

Raleigh, NC 27695 USA imcgreg@ncsu.edu | 714-864-1005 | geospatial.ncsu.edu

mcgregorian1 commented 3 years ago
  • [x] be sure that you're the last one to knit the files so that it picks up all the R packages

This has been addressed, see comment in #129

mcgregorian1 commented 3 years ago
  • [x] go through the text and insert citations. I've created a file with a lot of the references that I've added (refs_KAT.bib). I assume you'll want to import these into your library. Let me know if a different format would be better.

The easiest thing is to just add your file in the Rmd as another source to draw references from. I will do that.

If we want to change that (i.e. have all the references be in the same file) then let me know and I can consolidate.

mcgregorian1 commented 3 years ago

@teixeirak Zak et al is not in the reference folder and I didn't find it online. Olson has two references in the folder, 2018 and 2020. Here you put 2014; I wasn't sure if you're referring to a third reference.

"Indeed, tall trees require xylem of greater hydraulic efficiency, such that xylem conduit diameters are wider in the basal portions of taller trees, both within and across species [@olson_plant_2018; @liu_hydraulic_2019], and throughout the conductive systems of angiosperms (Zak et al. 2010, Olson et al. 2014,2018). "

teixeirak commented 3 years ago

I think both are in R2’s reference list.

On Jul 22, 2020, at 7:13 PM, Ian McGregor notifications@github.com wrote:

 External Email - Exercise Caution

@teixeirakhttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fteixeirak&data=02%7C01%7Cteixeirak%40si.edu%7Cac1ac28b9c0d4547ea7f08d82e94de24%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310564196714284&sdata=87WFTpxD8fsW3lDFdZEhRcwb8XSvxzc7fUMHgHzLp78%3D&reserved=0 Zak et al is not in the reference folder and I didn't find it online. Olson has two references in the folder, 2018 and 2020. Here you put 2014; I wasn't sure if you're referring to a third reference.

"Indeed, tall trees require xylem of greater hydraulic efficiency, such that xylem conduit diameters are wider in the basal portions of taller trees, both within and across species [@olson_plant_2018; @liu_hydraulic_2019], and throughout the conductive systems of angiosperms (Zak et al. 2010, Olson et al. 2014,2018). "

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FSCBI-ForestGEO%2FMcGregor_climate-sensitivity-variation%2Fissues%2F128%23issuecomment-662743001&data=02%7C01%7Cteixeirak%40si.edu%7Cac1ac28b9c0d4547ea7f08d82e94de24%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310564196714284&sdata=gTwgjKV424L91aCkHtag%2FsTjb07Ov%2BYXYUpHsLIYdFA%3D&reserved=0, or unsubscribehttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FABQPXDU2SYTSCTODF6IP243R45XCFANCNFSM4PE3JKAA&data=02%7C01%7Cteixeirak%40si.edu%7Cac1ac28b9c0d4547ea7f08d82e94de24%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310564196714284&sdata=nDQOsQzCZ1%2Bcns3XLl%2Fnmip9B3o1x6GpfqFSGgSV3i8%3D&reserved=0.

mcgregorian1 commented 3 years ago

Sounds good.

The DOI here refers to a Stephenson and Das 2020. I assume that's correct?

"The negative effect of height on $Rt$ held after accounting for species' traits, which is consistent with recent work finding height had a stronger influence on mortality risk than forest type during drought (Stovall et al. 2020)."

teixeirak commented 3 years ago

No, should be Stovall response tot that paper.

On Jul 22, 2020, at 7:22 PM, Ian McGregor notifications@github.com wrote:

 External Email - Exercise Caution

Sounds good.

The DOI here refers to a Stephenson and Das 2020. I assume that's correct?

"The negative effect of height on $Rt$ held after accounting for species' traits, which is consistent with recent work finding height had a stronger influence on mortality risk than forest type during drought (Stovall et al. 2020https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.1038%2Fs41467-020-17213-5&data=02%7C01%7Cteixeirak%40si.edu%7C930ea5f71cee40e244a708d82e9614b1%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310569410860666&sdata=SocOxeTmNx5LwzPDmp%2BvGNZdvwRy2Ul2nXozPtAApz4%3D&reserved=0)."

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FSCBI-ForestGEO%2FMcGregor_climate-sensitivity-variation%2Fissues%2F128%23issuecomment-662745669&data=02%7C01%7Cteixeirak%40si.edu%7C930ea5f71cee40e244a708d82e9614b1%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310569410860666&sdata=6W25m8C9SCM4pM2V9TFrWK6geDqC1PED91HKr2yMxUI%3D&reserved=0, or unsubscribehttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FABQPXDV4AEMQ265HE2AVAJ3R45YCXANCNFSM4PE3JKAA&data=02%7C01%7Cteixeirak%40si.edu%7C930ea5f71cee40e244a708d82e9614b1%7C989b5e2a14e44efe93b78cdd5fc5d11c%7C0%7C0%7C637310569410870616&sdata=B%2F4AX6qTd1Qv784HBWIS4747oo4fJto4Kg1Dse3eb8s%3D&reserved=0.

mcgregorian1 commented 3 years ago
  • [X] go through the text and insert citations. I've created a file with a lot of the references that I've added (refs_KAT.bib). I assume you'll want to import these into your library. Let me know if a different format would be better.

The easiest thing is to just add your file in the Rmd as another source to draw references from. I will do that.

If we want to change that (i.e. have all the references be in the same file) then let me know and I can consolidate.

Whelp turns out for whatever reason it doesn't recognize when I put three citations in. I'll transfer the necessary ones to my file and knit. Should be done soon.

teixeirak commented 3 years ago

Okay, this is resolved. For any additional citations that I add, I'll simply add them to book.bib. I will delete refs_KAT.bib because it is no longer needed.