fix up citations

[teixeirak]

@mcgregorian1,

• [x] we have a few citations that need to be added.
• [x] citations aren't rendered appropriately when enclosed in parentheses with other content:

(PLAdry; (Scoffoni et al., 2014))

(e.g., Lloret et al. (2011); D’Orangeville et al. (2018))

• [x] Here's one that's not rendering: ... in Virginia, USA (38\°53'36.6"N, 78\°08'43.4"W) [@bourg_initial_2013; @andersonteixeira_ctfs-forestgeo_2015]

[mcgregorian1]

@teixeirak which references need to be added?

[teixeirak]

If you look in the .Rmd file, you'll see some that I put in with links to the articles.

[mcgregorian1]

Ah ok. I'll get to those soon

On Mon, Mar 2, 2020 at 10:21 AM Kristina Anderson-Teixeira < notifications@github.com> wrote:

If you look in the .Rmd file, you'll see some that I put in with links to the articles.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/SCBI-ForestGEO/McGregor_climate-sensitivity-variation/issues/78?email_source=notifications&email_token=AJNRBEP24U44ICPDBQRPKSTRFPFHRA5CNFSM4KYR6MKKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOENPWSEI#issuecomment-593455377, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJNRBEIFWQNBQ5JEHXSFDF3RFPFHRANCNFSM4KYR6MKA .

--

Ian McGregor

Ph.D. Student | Center for Geospatial Analytics

He/Him/His

College of Natural Resources

Jordan Hall 4120 | Campus Box 7106

North Carolina State University

2800 Faucette Dr.

Raleigh, NC 27695 USA imcgreg@ncsu.edu | 714-864-1005 | geospatial.ncsu.edu

[mcgregorian1]

Did you want this to be cited or just mentioning the website? It's an odd site for citation.

"PDSI divisional data for Northern Virginia were obtained from NOAA (https://www7.ncdc.noaa.gov/CDO/CDODivisionalSelect.jsp) in December 2017."

[mcgregorian1]

Line 154 in the main .Rmd file:

"...with static versions corresponding to data and analyses presented here archived in Zenodo (DOIs: 10.5281/zenodo.3604993 and [TBD], respectively krista just to remind you this TBD is here)."

When I went to this site for zenodo it takes me to an update page. I'm not sure which specific link you wanted here.

[teixeirak]

Did you want this to be cited or just mentioning the website? It's an odd site for citation.

"PDSI divisional data for Northern Virginia were obtained from NOAA (https://www7.ncdc.noaa.gov/CDO/CDODivisionalSelect.jsp) in December 2017."

I think its fine as is.

[mcgregorian1]

Cool. This is done for now until we add more

[teixeirak]

I think we're

* citations aren't rendered appropriately when enclosed in parentheses with other content:

@mcgregorian1, these examples are still an issue. For the examples above, we'd want:

(PLAdry; Scoffoni et al., 2014)

(e.g., Lloret et al. 2011; D’Orangeville et al. 2018)

That is, we don't want parentheses within parentheses. I'll see if I can find a fast solution, but if not I don't think its worth holding up the submission.

[mcgregorian1]

I see what you mean. In markdown if you have [@citation], the brackets serve as the parentheses. I can change these quickly.

[mcgregorian1]

Ok I just fixed the Scoffoni but the d'orangeville reference isn't showing up at all when I search the text

[teixeirak]

Hold on-- I'm working on it right now too. I just pushed the latest, but think you'll have a conflicted copy.

[mcgregorian1]

no worries, i just pushed

[teixeirak]

This actually doesn't get what I was hoping. It gives (PLAdry; Scoffoni et al. (2014)).

I'm hoping to get (PLAdry; Scoffoni et al. 2014). (no parentheses around year)

Do you know a way to do that?

[mcgregorian1]

Yeah I noticed that. I think with the way that markdown formats things, it's unavoidable unless we hand-type the reference. If we do this, however, it will not link to the references section.

[teixeirak]

It's not a big deal. We can leave it as is for now, and the journal will fix it up in the publication process anyway.