SCCAF sccaf issues - Githubissues

SCCAF / sccaf

Single-Cell Clustering Assessment Framework

MIT License

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issues

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install and read problem : SCCAF conflicts with new version of scanpy and anndata package and as I installed old version of scanpy it couldn't read my processed h5ad file

#51 Fateme2112 opened 2 weeks ago
0
Pandas cannot sent attribute

#50 zsfrbkv opened 10 months ago
1
Add an option to plot legends on ROC curve

#49 YY-SONG0718 opened 1 year ago
0
Scanpy==1.4.6 dependency while working with SCCAF

#48 AkilaRanjith opened 2 years ago
0
Outdated scanpy dependency

#47 maxim-h opened 2 years ago
1
Update __init__.py

#46 chichaumiau closed 2 years ago
0
NameError: name 'default_26' is not defined

#45 cystone opened 3 years ago
1
Fixed bug in command line tool with option --optimise which resulted …

#44 hpon opened 3 years ago
0
Update setup.py

#43 ctr26 opened 3 years ago
0
How to collect and plot the accuracies of all SCCAF rounds

#42 Puriney opened 3 years ago
0
problem with SCCAF installation using conda

#41 mkrzak opened 3 years ago
0
IndexError when performing SCCAF cluster analysis

#40 leomorelli opened 3 years ago
0
error: write h5 file fail

#39 zznx opened 3 years ago
1
Citation

#38 cbiagii opened 3 years ago
0
Using the commands in 'Parallel run of assessments' could raise 'FileNotFoundError'

#37 lsq2 opened 4 years ago
0
ValueError: At least one label specified must be in y_true

#36 tina-roostaei opened 4 years ago
4
how to use original Dimension Reduction information from Seurat.

#35 aina91 opened 4 years ago
4
Error when running with plot=TRUE

#34 s2hui opened 4 years ago
0
Errors when using low_res parameter to constrain optimization

#33 s2hui opened 4 years ago
1
Run SCCAF "total error" in Galaxy

#32 mariusrueve opened 4 years ago
0
SCCAF for scATAC-seq

#31 RegnerM2015 opened 4 years ago
0
galaxy typos

#30 colindaven opened 4 years ago
0
Automatic deploy for pypi

#29 pcm32 closed 4 years ago
0
Feature/norm

#28 chichaumiau closed 4 years ago
2
Feature/norm

#27 chichaumiau closed 4 years ago
0
Feature/norm

#26 chichaumiau closed 4 years ago
0
Update __init__.py

#25 chichaumiau closed 4 years ago
0
Fix logg.warn usage

#24 pcm32 closed 4 years ago
0
regress out cli

#23 pcm32 closed 4 years ago
1
SCCAF cli should exit with an error when no UMAP or tSNE embeddings are available

#22 pcm32 opened 4 years ago
0
Improve roc legend size both plots

#21 pcm32 closed 4 years ago
0
On occassions, cross validation will fail because sampling picks sets belonging to a single class

#20 pcm32 opened 4 years ago
1
Adds psutil as dependency for proper OOM killing

#19 pcm32 closed 4 years ago
0
Allows to set number of iterations for sampling from cli

#18 pcm32 closed 4 years ago
1
Catches blank or invalid clustering label.

#17 pcm32 closed 4 years ago
0
Require psutil as a dependency to gracefully kill processes when OOM

#16 pcm32 closed 4 years ago
0
plot_roc and gray heatmap are producing large number of matplotlib figures open warning

#15 pcm32 opened 4 years ago
0
Move to scanpy 1.4.4 and ROC plotting

#14 pcm32 closed 4 years ago
0
SCCAF should exit with error code when missing anndata construct

#13 pcm32 closed 4 years ago
0
Natural order for merge plot and other plot improvements

#12 pcm32 closed 4 years ago
0
Single pdf output

#11 pcm32 closed 4 years ago
0
Release/0.0.5

#10 pcm32 closed 4 years ago
0
Notebook with remote data.

#9 pcm32 closed 4 years ago
0
Feature/chichaus v0.0.5

#8 pcm32 closed 4 years ago
0
Travis testing

#7 pcm32 closed 4 years ago
0
Cli addition

#6 pcm32 closed 4 years ago
0
No compiler errors anymore

#5 pcm32 closed 4 years ago
0
Make package installable and other minor issues

#4 pcm32 closed 4 years ago
0
many SCCAF methods can only be used from inside iPython/Jupyter notebooks

#3 pcm32 closed 4 years ago
2
joblib needs to be added as dependency

#2 pcm32 closed 4 years ago
1