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SCIInstitute / SCIRun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
http://scirun.org
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Add NIfTI file format support #655

Open a-y-khan opened 10 years ago

a-y-khan commented 10 years ago

Write importer and exporter for the NIfTI file format. NIfTI library with CMake file is available.

pip010 commented 9 years ago

How is this going? I can help you this one! I need to do it for my scirun4 clone anyway!

a-y-khan commented 9 years ago

Not started yet. Seg3D supports NIfTI, or you can use ITK, or other Kitware tools.

pip010 commented 9 years ago

Indeed, I looked into ITK nifti reader quite recently and looked quite capable. However, cant say the same for VTK. Can also look into Seg3D with my sample repo of nifti files. Thanks.

On Tue, Aug 25, 2015 at 5:59 PM, Ayla Khan notifications@github.com wrote:

Not started yet. Seg3D supports NIfTI, or you can use ITK, or other Kitware tools.

— Reply to this email directly or view it on GitHub https://github.com/SCIInstitute/SCIRun/issues/655#issuecomment-134648055 .

All the best, Petar Petrov http://ppetrov.net

github-actions[bot] commented 5 years ago

Stale issue message

dcwhite commented 5 years ago

@jessdtate Any other user examples for this one?

jessdtate commented 5 years ago

Butson's students use this format. We can ask them for some examples.

dcwhite commented 5 years ago

@SCIInstitute/butson-lab Anybody want this feature implemented for current work?

ChantelC commented 5 years ago

If it was available, I would definitely use it.

Best,

Chantel

From: Dan White notifications@github.com Sent: Wednesday, October 30, 2019 9:53 AM To: SCIInstitute/SCIRun SCIRun@noreply.github.com Cc: CHANTEL MARIE CHARLEBOIS chantel.charlebois@utah.edu; Team mention team_mention@noreply.github.com Subject: Re: [SCIInstitute/SCIRun] Add NIfTI file format support (#655)

@SCIInstitute/butson-labhttps://github.com/orgs/SCIInstitute/teams/butson-lab Anybody want this feature implemented for current work?

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHubhttps://github.com/SCIInstitute/SCIRun/issues/655?email_source=notifications&email_token=AHKG7YWSXT234BY7CKWUHK3QRGUV5A5CNFSM4AVG4MJ2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECUXLMQ#issuecomment-547976626, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AHKG7YVV225MEWMLYNPI6J3QRGUV5ANCNFSM4AVG4MJQ.

dcwhite commented 5 years ago

@ChantelC Can you upload a small example file here for testing? It probably needs to be zipped up.

ChantelC commented 5 years ago

Let me know if this works.

Best,

Chantel

-- Chantel M. Charlebois NSF Graduate Research Fellow Ph.D. Student | Department of Biomedical Engineering Scientific Computing & Imaging Institute Butson Lab & Dorval Lab University of Utah

On Oct 30, 2019, at 10:08 AM, Dan White notifications@github.com<mailto:notifications@github.com> wrote:

@ChantelChttps://github.com/ChantelC Can you upload a small example file here for testing? It probably needs to be zipped up.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/SCIInstitute/SCIRun/issues/655?email_source=notifications&email_token=AHKG7YSF7IFLYWH5K4BZYWLQRGWPVA5CNFSM4AVG4MJ2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECUZGJI#issuecomment-547984165, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AHKG7YSVGYRSVXNKBEE7SK3QRGWPVANCNFSM4AVG4MJQ.

ChantelC commented 5 years ago

DBS1_postMR.nii.gz

github-actions[bot] commented 3 years ago

This issue is stale because it has been open 240 days with no activity. Remove the stale label or comment, or this will be closed in 60 days.

github-actions[bot] commented 2 years ago

This issue is stale because it has been open 240 days with no activity. Remove the stale label or comment, or this will be closed in 60 days.