KennethEJansen
commented
5 years ago I can push this problem from convert to Chef by adding the no-pyramid-fix flag. In chef, the crash is not descriptive.
kjansen@viz003: /projects/tools/Models/JF_TunnelDasha/Review/Chef/8-1-Chef $ ./runChef.sh 8 PUMI Git hash 2.2.0 PUMI version 2.2.0 Git hash f46b3fe79557b76166be55328ed0efd5a9b50169 "../simMeshToMdsMesh/geom.xmt_txt" and "../simMeshToMdsMesh/geom.smd" loaded in 0.022851 seconds mesh bz2:../simMeshToMdsMesh/mdsMesh_bz2/ loaded in 76.937528 seconds number of tet 5357305 hex 0 prism 8580228 pyramid 62104 mesh entity counts: v 5399730 e 23815386 f 32415294 r 13999637 mesh verified in 55.405519 seconds
MeshAdapt: version 2.0 !
MeshAdapt: marked 8642332 layer elements in 18.947973 seconds
MeshAdapt: input mesh: checked layer quality in 7.548969 seconds: 0 unsafe elements signal 11 caught by pcu
With Tetrahedronize 1 in adapt.inp, Chef crashes. With Tetrahedronize 0 it seems to be working.
I am guessing Simmetrix is making some sort of pyramid that Chef does not know how to tetrahedronize?
fix_pyramids 1 attach_order 0 enable_log 2 native-model './geom.xmt_txt' model 'geom.smd' simmetrix mesh 'geom.sms' output mesh 'bz2:mdsMesh_bz2/' read and created the simmetrix mesh in 52.742461 seconds created the apf_sim mesh in 1.260211 seconds created the apf_mds mesh in 134.857026 seconds number of tet 5357305 hex 0 prism 8580228 pyramid 62104 mesh entity counts: v 5399730 e 23815386 f 32415294 r 13999637
MeshAdapt: version 2.0 !
MeshAdapt: marked 8642332 layer elements in 29.147083 seconds
MeshAdapt: input mesh: checked layer quality in 6.513506 seconds: 0 unsafe elements m->getType(elem) == apf::Mesh::PYRAMID failed at /projects/tools/SCOREC-core/core/ma/maTetrahedronize.cc + 617 [viz003:06283] Process received signal