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parallel finite element unstructured meshes
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ctest failures on rhel9 system #398

Open cwsmith opened 11 months ago

cwsmith commented 11 months ago

environment

module use /opt/scorec/spack/rhel9/v0201_4/lmod/linux-rhel9-x86_64/Core/
module load gcc/12.3.0-iil3lno mpich/4.1.1-xpoyz4t cmake
module load simmetrix-simmodsuite
module load zoltan

cmake configure command

cmake -S core -B buildPumiOptoffSimonOmegaoff -DBUILD_SHARED_LIBS=on -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_Fortran_COMPILER=gfortran -DSCOREC_CXX_OPTIMIZE=off -DSCOREC_EXTRA_CXX_FLAGS= -DVALGRIND= -DVALGRIND_ARGS= -DMDS_ID_TYPE=int -DPCU_COMPRESS=ON -DENABLE_ZOLTAN=ON -DPUMI_FORTRAN_INTERFACE=off -DENABLE_OMEGA_H=off -DIS_TESTING=ON -DENABLE_SIMMETRIX=on -DENABLE_FIELDSIM=OFF -DSIM_MPI=mpich4.1.1 -DSIM_PARASOLID=on -DSIM_ACIS=on -DMESHES=core/pumi-meshes/ -DCMAKE_INSTALL_PREFIX=buildPumiOptoffSimonOmegaoff/install

ctest failures - the parallel_meshgen_* failures were observed with a similar build on a rhel7 system, all other tests pass 

         69 - test_residual_error_estimate (Failed)                                                                                                                                                                                                       
        124 - parallel_meshgen (Failed)                                                                                                                                                                                                                   
        125 - parallel_meshgen_surf (Failed)                                                                                                                                                                                                              
        126 - parallel_meshgen_vol (Failed)                                                                                                                                                                                                               
        127 - parallel_meshgen_para (Failed)                                                                                                                                                                                                              
        131 - curvedSphere (Failed)                                                                                                                                                                                                                       
        132 - highOrderSolutionTransfer (Failed)                                                                                                                                                                                                          
        133 - curvedKova (Failed)                                                                                                                                                                                                                         
        134 - degen_shpere_full (Failed)                                                                                                                                                                                                                  
        135 - degen_shpere_no_north (Failed)                                                                                                                                                                                                              
        136 - degen_shpere_vertical_slice (Failed)                                                                                                                                                                                                        
        137 - crack_test (Failed)

failure to read/load smb mesh kills test_residual_error_estimate 

gdb --args ./residualErrorEstimation_test "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic/fichera.x_t" "/space/cwsmith/pumiTestRhel9Sim/core
/pumi-meshes//electromagnetic/fichera_1k.smb"

Thread 1 "render" received signal SIGABRT, Aborted.
0x00007fffecaa154c in __pthread_kill_implementation () from /lib64/libc.so.6
Missing separate debuginfos, use: dnf debuginfo-install glibc-2.34-60.el9.x86_64
(ins)(gdb) where
#0  0x00007fffecaa154c in __pthread_kill_implementation () from /lib64/libc.so.6
#1  0x00007fffeca54d46 in raise () from /lib64/libc.so.6
#2  0x00007fffeca287f3 in abort () from /lib64/libc.so.6
#3  0x00007ffff7535773 in PCU_Assert_Fail (msg=0x7fffffff2c60 "m->model[type_mds][j] failed at /space/cwsmith/pumiTestRhel9Sim/core/mds/mds_smb.c + 249 \n") at /space/cwsmith/pumiTestRhel9Sim/core/pcu/pcu_util.c:16
#4  0x00007fffedd74141 in read_class (f=0x76d480, m=0x86e0c0) at /space/cwsmith/pumiTestRhel9Sim/core/mds/mds_smb.c:249
#5  0x00007fffedd7553a in read_smb (model=0x863880, filename=0x870420 "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera_1k0.smb", zip=0, ignore_peers=0, apf_mesh=0x86f420)
    at /space/cwsmith/pumiTestRhel9Sim/core/mds/mds_smb.c:594
#6  0x00007fffedd75cd4 in mds_read_smb (model=0x863880, pathname=0x7fffffff458e "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera_1k.smb", ignore_peers=0, apf_mesh=0x86f420)
    at /space/cwsmith/pumiTestRhel9Sim/core/mds/mds_smb.c:739
#7  0x00007fffedd7a03c in apf::MeshMDS::MeshMDS (this=0x86f420, m=0x863880, pathname=0x7fffffff458e "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera_1k.smb") at /space/cwsmith/pumiTestRhel9Sim/core/mds/apfMDS.cc:201
#8  0x00007fffedd777dd in apf::loadMdsMesh (model=0x863880, meshfile=0x7fffffff458e "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera_1k.smb") at /space/cwsmith/pumiTestRhel9Sim/core/mds/apfMDS.cc:933
#9  0x00007fffedd77950 in apf::loadMdsMesh (modelfile=0x7fffffff453f "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera.x_t", 
    meshfile=0x7fffffff458e "/space/cwsmith/pumiTestRhel9Sim/core/pumi-meshes//electromagnetic//fichera_1k.smb") at /space/cwsmith/pumiTestRhel9Sim/core/mds/apfMDS.cc:953
#10 0x0000000000402409 in main (argc=4, argv=0x7fffffff3fe8) at /space/cwsmith/pumiTestRhel9Sim/core/test/render.cc:43
(ins)(gdb)