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SD2E / opil

The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces
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encode file type #163

Open tramyn opened 3 years ago

tramyn commented 3 years ago

I want to encode a list of files types on a measurement. Currently, I have to represent this as a custom annotation that appears on an opil.Measurement() object.

bbartley commented 3 years ago

@tramyn can you provide more detail on your use case? How is the file type intended to be used?

Could you use a URIParameter with an EDAM file format specified (https://bioportal.bioontology.org/ontologies/EDAM/?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Fformat_1915)?

tramyn commented 3 years ago

@mwes how are file types for a measurement interpreted in a structured request? Could you provide some description here?

tramyn commented 3 years ago

List of file-types here: https://schema.catalog.sd2e.org/schemas/filetype_label.json