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SD2E
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opil
The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces
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Consider adding property super types for cardinality
#94
bbartley
opened
3 years ago
0
KeyError when calling generate_opil_from_strateos for CellFreeBioSwitches
#93
tramyn
closed
3 years ago
2
Create an opil.Measure
#92
tramyn
closed
3 years ago
0
TypeError when referencing a list of time to an opil.Measurement object
#91
tramyn
closed
3 years ago
0
Change name parameters to identity to conform with new sbol3 API
#90
bbartley
closed
3 years ago
0
Create a function on ExperimentRequest that returns empty or missing parameters
#89
jgladwig
opened
3 years ago
0
How to annotate whole-sample values?
#88
jakebeal
opened
3 years ago
0
Representing controls
#87
jakebeal
opened
3 years ago
3
Should an ExperimentRequest be able to specify different measurements for different sample sets?
#86
jakebeal
opened
3 years ago
0
Factor out Strateos-to-OPIL converter into separate repo
#85
bbartley
opened
3 years ago
0
82 missing fields
#84
bbartley
closed
3 years ago
0
OPIL does not check minimum cardinality
#83
bbartley
opened
3 years ago
0
Missing type field for Measurement class
#82
bbartley
closed
3 years ago
1
Validate required Parameters using SHACL
#81
bbartley
opened
3 years ago
0
56 duplicate entries
#80
bbartley
closed
3 years ago
0
Upgrade sbol dependency
#79
bbartley
closed
3 years ago
0
Use OM terms in Strateos to OPIL conversion
#78
bbartley
opened
3 years ago
0
Add strateos:dotname field
#77
bbartley
closed
3 years ago
0
Embed options parameters into dotname syntax
#76
bbartley
closed
3 years ago
0
Cardinality on `value` property is incorrect
#75
bbartley
closed
3 years ago
1
Cardinality on `ParameterValue.value` is incorrect
#74
bbartley
closed
3 years ago
0
Parameter default_value should be compositional
#73
bbartley
closed
3 years ago
3
Improve SHACL error message
#72
bbartley
closed
3 years ago
0
Add additional Strateos schema files to test suite
#71
bbartley
closed
3 years ago
0
Fix dropped parameter definitions
#70
bbartley
closed
3 years ago
0
Capture description fields from a Strateos schema file
#69
bbartley
closed
3 years ago
0
Inherit from SBOL classes
#68
bbartley
closed
3 years ago
0
OPIL classes should inherit attributes from SBOL superclasses
#67
bbartley
closed
3 years ago
0
Fix defaultValue cardinality
#66
bbartley
closed
3 years ago
0
Encode description field from strateos protocols
#65
tramyn
closed
3 years ago
1
How to create a sampleSet object
#64
tramyn
closed
3 years ago
0
Update validation error message to be more human readable
#63
tramyn
opened
3 years ago
1
Create test cases for running OPIL Strateos converter
#62
tramyn
closed
3 years ago
2
Conversion for GrowthCurve dropping parameter fields
#61
tramyn
closed
3 years ago
0
Unexpected Parameter fields are added when converting Strateos ObstacleCourse Protocol
#60
tramyn
closed
3 years ago
2
Conversion for ObstacleCourse dropping parameter fields
#59
tramyn
closed
3 years ago
0
Unexpected Parameter fields are added when converting Strateos TimeSeriesHTP Protocol
#58
tramyn
closed
3 years ago
2
Conversion for TimeSeriesHTP dropping parameter fields
#57
tramyn
closed
3 years ago
0
Conversion for TimeSeriesHTP has duplicate entries
#56
tramyn
closed
3 years ago
0
Encode Strateos protocol ID when performing opil.parse_strateos_json()
#55
tramyn
opened
3 years ago
0
Provide alternative way to get ProtocolInterface from an OPIL Document
#54
tramyn
opened
3 years ago
2
49 shacl error
#53
bbartley
closed
3 years ago
0
Provide alternative way to set default_value for a Parameter object
#52
tramyn
closed
3 years ago
4
Provide documentation to clarify usage of Parameter types
#51
tramyn
opened
3 years ago
0
Support clone/copy methods for Parameter objects
#50
tramyn
closed
3 years ago
1
Failed validation with DatatypeConstraintComponent
#49
tramyn
closed
3 years ago
0
Incorporate mock-up experimental request file into testing framework
#48
bbartley
closed
3 years ago
0
Add annotation for Strateos protocol ID
#47
bbartley
closed
3 years ago
0
Runs on obstacle_course schema
#46
bbartley
closed
3 years ago
0
Need sanitizing of object IDs
#45
bbartley
opened
3 years ago
0
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