Released Stable version of Starterator for SEA phages; Note does not work with current version of phamerator database! For version compatible with current phamerator database, see this repo: cdshaffer/starterator
need to confirm but this is what happened:
boot starterator beta version 1.1.1 by command line so can watch execution
do single pham, notice that needed to create database, which was valid as phamerator database had just been updated.
at end of pham calculation hit, run another analysis and noticed that it rebuilt the blast database once again.
killed starterator, restarted and did another single pham, did not build database so it is likely that it is not curating the fact that the database has already been updated until starterator quits? (maybe). Not a huge issue but a small waste in computation when run in this unusual way.
need to confirm but this is what happened: boot starterator beta version 1.1.1 by command line so can watch execution do single pham, notice that needed to create database, which was valid as phamerator database had just been updated. at end of pham calculation hit, run another analysis and noticed that it rebuilt the blast database once again. killed starterator, restarted and did another single pham, did not build database so it is likely that it is not curating the fact that the database has already been updated until starterator quits? (maybe). Not a huge issue but a small waste in computation when run in this unusual way.