Released Stable version of Starterator for SEA phages; Note does not work with current version of phamerator database! For version compatible with current phamerator database, see this repo: cdshaffer/starterator
Some pham reports are failing due to wrap around genes. The example found is pham 23421 of version 95, includes the wrap around gene babyruth_1. This gene is annotated from base 54 to 42134 (rev). When running this pham the clustal alignment fails dues to incorrectly formatted multi-fasta file. In the file created the header line for babyruth_1 is found but no sequence is added. This causes clustal to exit with failure and hence no pham report is created.
Some pham reports are failing due to wrap around genes. The example found is pham 23421 of version 95, includes the wrap around gene babyruth_1. This gene is annotated from base 54 to 42134 (rev). When running this pham the clustal alignment fails dues to incorrectly formatted multi-fasta file. In the file created the header line for babyruth_1 is found but no sequence is added. This causes clustal to exit with failure and hence no pham report is created.