Refactoring

[MKLau]

• [ ] Reduce cyclomatic complexity by writing shorter functions: particularly, cycliv, enaCycle, enaUncertaintyand enaAscendency
• [ ] Use <- instead of = for assignments: e.g. R/TES.R
• [ ] Avoid long code lines (i.e. >80 characters): e.g. EcoNetWeb, ShannonDiversity, TES
• [ ] Avoid sapply, use vapply
• [ ] Avoid 1:length, 1:row, etc., and use seq_len or seq_along
• [ ] Don’t import whole packages, just specific functions you need
• [ ] Avoid using T and F for variables and always use TRUE and FALSE for logicals
• [ ] Use snake case (e.g. snake_case()) for functions.
• [ ] Move internal functions to sub-routines within main function files.

[MKLau]

Consider generating a package flow diagram.