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SFGLab / ConsensuSV-pipeline

Automatised pipeline of ConsensuSV workflow.
MIT License
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Running Issue: Run Time Error #2

Open 543090lee opened 2 years ago

543090lee commented 2 years ago

Hello, I ran ConsensuSV, and ran into following issue. ERROR: [pid 1319] Worker Worker(salt=210304433, workers=4, host=4305d4cfaeb1, username=root, pid=25) failed IndexBam(working_dir=/test_working_dir/, file_name_1=/tools/ERR018471_1.filt.fastq, file_name_2=/tools/ERR018471_2.filt.fastq, sample_name=ERR018471) Traceback (most recent call last): File "/tools/anaconda/lib/python3.8/site-packages/luigi/worker.py", line 176, in run raise RuntimeError('Unfulfilled %s at run time: %s' % (deps, ', '.join(missing))) RuntimeError: Unfulfilled dependency at run time: SortBamtools_ERR018471__tools_ERR018471_ERR018471_244d949768 ERROR: [pid 1321] Worker Worker(salt=210304433, workers=4, host=4305d4cfaeb1, username=root, pid=25) failed IndexBam(working_dir=/test_working_dir/, file_name_1=/tools/ERR018471_1.filt.fastq, file_name_2=/tools/ERR018471_2.filt.fastq, sample_name=ERR018471) Traceback (most recent call last): File "/tools/anaconda/lib/python3.8/site-packages/luigi/worker.py", line 176, in run raise RuntimeError('Unfulfilled %s at run time: %s' % (deps, ', '.join(missing))) RuntimeError: Unfulfilled dependency at run time: SortBamtools_ERR018471__tools_ERR018471_ERR018471_244d949768

Thank you for help

jdy4389 commented 1 year ago

I am getting the same error when attempting running the docker image and attempting ./test_run_fast.sh. Tasks 1-5 complete, and IndexBam fails with the above error.