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SFUStatgen / LDheatmap

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Cannot add Gene track with "LDheatmap.addGenes" #2

Closed JPingAMMS closed 4 years ago

JPingAMMS commented 4 years ago

run example code, like:

data(GIMAP5.CEU)
ll<-LDheatmap(GIMAP5.CEU$snp.data,GIMAP5.CEU$snp.support$Position,flip=TRUE)
llplusgenes <- LDheatmap.addGenes(ll, chr="chr7", genome="hg18")

got error: "Error: Bad Request"

Questions may be induced by interaction with "rtracklayer" package?

Will you please to check it?

mcneney commented 4 years ago

Thanks for your interest in LDheatmap. The example works for me. Do you have rtracklayer installed from BioConductor? Can you check by running the following code

session <- rtracklayer::browserSession() GenomeInfoDb::genome(session) <- "hg18"

Thanks, Brad

JPingAMMS commented 4 years ago

Hi, Brad, I tried your code, and no error happened. Then, I google the error and found that it is firewall. Please close it.

Thanks, Jie