search

SGDDNB / ShinyCell

Shiny Interactive Web Apps for Single-Cell Data
GNU General Public License v3.0
160 stars 57 forks source link

Create a Shiny package for handling spatial transcriptomics data #86

Open howtofindme opened 6 months ago

howtofindme commented 6 months ago

Hi, Wonderful job!

I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how Shinycell handles single-cell transcriptomics data.

However, currently, there is no R package available that fulfills this requirement.

many researchers are only familiar with using the Seurat package for spatial transcriptomics data analysis, would you be able to create an interface for the Seurat package so that Visium Seurat objects can be used to create Shiny apps? With the increasing depth of research in spatial transcriptomics, I believe this feature would greatly advance the field. Looking forward to your response. Best, Young

NadineBestard commented 4 months ago

This has been asked before and according to the authors this is not in the near future plans: https://github.com/SGDDNB/ShinyCell/issues/46