covselect.R: all models failed after model selection intermediate step

[GoogleCodeExporter]

1) What operating system are you using?

Linux server

2) What error message was displayed?

################################################################################
Error in covariateselect(file = data, selection = selecttype, loc = 
paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step
################################################################################

3) What was the exact command you used that resulted in the error?

################################################################################
zinba(basecountfile = 'SRR072814.basecount',
twoBit = '/Database/Ucsc/sacCer2/map36/sacCer2.2bit', 
outfile = 'out_ZINBA/SRR072814_2', 
seq = 'SRR072814.bed',
align = 'Alignability' ,
input = 'none' ,
threshold = 0.05, 
numProc = 6,
refinepeaks = 1, 
printFullOut = 0, 
filetype = 'bed', 
extension = 100,
broad = FALSE, 
mode = 'peaks', 
interaction = TRUE, 
FDR = TRUE,
genome = 'ce')
################################################################################

4) Please copy and paste any additional screen output that resulted from
running the command

################################################################################

3  completed out of  361       .........
model  344  completed out of  361       .
model  341  completed out of  361       ..
model  342  completed out of  361       .......
model  345  completed out of  361       .....
model  346  completed out of  361       .
model  347  completed out of  361       ...............
model  348  completed out of  361 
model  349  completed out of  361       ...
model  350  completed out of  361       ......
model  351  completed out of  361       .......
model  352  completed out of  361       .
model  353  completed out of  361       ..........
model  354  completed out of  361       .....
model  356  completed out of  361       .
model  355  completed out of  361       .......
model  357  completed out of  361       .....
model  358  completed out of  361       ....
model  359  completed out of  361       ...
model  360  completed out of  361       ..
model  361  completed out of  361       Error in covariateselect(file = data, 
selection = selecttype, loc = paste(outfile_subpath,  : 
  covselect.R:  all models failed after model selection intermediate step
################################################################################

Original issue reported on code.google.com by junna...@gmail.com on 14 Jun 2012 at 9:23

[GoogleCodeExporter]

If it modify some parameters with same bed file, there`s not error 

Original comment by junna...@gmail.com on 14 Jun 2012 at 9:25

[GoogleCodeExporter]

we are currently incorporating these issues into a new zinba version, check 
back soon for a comprehensive update

Original comment by homer...@gmail.com on 20 Nov 2012 at 8:54

• Changed state: Verified