aught segfault when running basecountimport

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1) What operating system are you using?
CentOS release 5.5 

2) What error message was displayed?

 *** caught segfault ***
address 0x2b8615db1000, cause 'memory not mapped'

Traceback:
 1: .C("getSeqCountProfile", as.character(inputfile2), as.character(winlist),     as.double(threshold), as.character(method), as.integer(printFullOut),     as.character(outputfile), as.character(twobitfile), as.character(chromosome),     as.integer(winGap), as.integer(FDR^2), as.integer(binary),     PACKAGE = "zinba")
 2: basecountimport(inputfile = basecountfile, winlist = winlist,     threshold = threshold, method = method, printFullOut = printFullOut,     outputfile = bpout, twobitfile = twoBit, winGap = winGap,     FDR = FDR)
 3: getrefinedpeaks(winlist = winlist, basecountfile = basecountfile,     bpout = bpout, peakout = peakout, twoBit = twoBit, winSize = winSize,     pWinSize = pWinSize, pquant = pquant, printFullOut = printFullOut,     peakconfidence = peakconfidence, threshold = threshold, method = method,     winGap = winGap, extension = extension, FDR = FDR)
 4: run.zinba(buildwin = 1, refinepeaks = 1, peakconfidence = 0.95,     seq = "./bowtie/GM12878_faire_rep1.new.hits",     input = "none", filetype = "bowtie", twoBit = "./goldenPath/hg18/bigZips/hg18.2bit",     winSize = 250, offset = 125, extension = 134, basecountfile = "data/GM12878_faire_rep1.basecount",     align = "align_athresh4_extension134/", formula = exp_count ~         gcPerc + align_perc + exp_cnvwin_log, formulaE = exp_count ~         1, formulaZ = exp_count ~ gcPerc + align_perc + exp_cnvwin_log,     numProc = 4, winGap = 0, outfile = "./faire", printFullOut = 1,     method = "mixture")
aborting ...
/opt/gridengine/default/spool/compute-23-41/job_scripts/4463872: line 1: 11695 
Segmentation fault      Rscript runZinba.R

3) What was the exact command you used that resulted in the error?

library(zinba)
basecountimport(
        inputfile='./data/GM12878_faire_rep1.basecount',
        winlist='./faire_files/faire.winlist',
        threshold=.01,
        method='mixture',
        printFullOut=1,
        twobitfile='./goldenPath/hg18/bigZips/hg18.2bit',
        outputfile='./temp.file'
)

4) Please copy and paste any additional screen output that resulted from
running the command

I'm using ZINBA version 2.02.03. It's a similar problem like jing...@gmail.com 
report, but I'm not expert programmer at all,I need to help. Thanks! 

Original issue reported on code.google.com by scu...@gmail.com on 6 Mar 2013 at 3:32