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SIESTA-eu / wp15

work package 15, use case 2
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ERPCore analysis pipeline output data needs some reorganization #17

Open robertoostenveld opened 3 weeks ago

robertoostenveld commented 3 weeks ago

for MMN the output is now

output/MMN/AvgChanlocs.mat
output/MMN/MMN/ERP_MMN.mat
output/MMN/MMN/ERPs_deviant_Trimmed_mean_of_Weighted mean.mat
output/MMN/MMN/ERPs_deviant_single_subjects_Weighted mean.mat
output/MMN/MMN/ERPs_standard_Trimmed_mean_of_Weighted mean.mat
output/MMN/MMN/ERPs_standard_single_subjects_Weighted mean.mat
output/MMN/MMN/H0/H0_paired_samples_ttest_parameter_1_2.mat
output/MMN/MMN/H0/boot_table.mat
output/MMN/MMN/H0/tfce_H0_paired_samples_ttest_parameter_1_2.mat
output/MMN/MMN/LIMO.mat
output/MMN/MMN/Y1r.mat
output/MMN/MMN/Y2r.mat
output/MMN/MMN/paired_samples_ttest_parameter_1_2.mat
output/MMN/MMN/paired_samples_ttest_parameter_1_2_Cohensd.mat
output/MMN/MMN/tfce/tfce_paired_samples_ttest_parameter_1_2.mat

The 2nd directory level that states "MMN" should go in the derivatives folder (not shown here). It is the result of the analysis, i.e. it relates to the so-called MMN component in the ERP.

The 1st directory level that states "MMN" is the task, and therefore can be called task-MMN

So for example

output/task-MMN/derivatives/MMN/Y1r.mat
CPernet commented 2 weeks ago

updated --- note that 'output' is the derivatives folder where data are imported.
the new tree structure is: output/task-X/2nd_level/....