Generate QC reports - Githubissues

glatard commented 8 years ago

CBRAIN has a framework to display QC panels specific to a particular file type, and to tag these files accordingly. A QC framework can be implemented by:

[x] creating a specific type of PSOM or Niak results. Done. All files ending with ".niak" will be associated with a particular CBRAIN file type that will have the Niak viewer and QC panel.
[ ] The viewer and QC panels associated to this file type will show HTML pages produced by Niak. These webpages will be generated by Niak once https://github.com/SIMEXP/niak/issues/176 is implemented.

@pbellec also suggested that:

[x] QC tags are saved in the data. At the moment this cannot be done easily but a CSV file containing all the QC tags can be exported from the file list.
[x] Comments can be added to QC tags. Available by default in CBRAIN.
[ ] Viewer is also used while pipeline is running, to monitor progression.

glatard commented 8 years ago

On hold, waiting for a release of Niak that would produce HTML pages (has to be produced by @poquirion and/or @pbellec).

pbellec commented 8 years ago

I am integrating the generation of the report for fMRI preprocessing in the preprocessing pipeline itself. Relevant branch in niak is here: https://github.com/SIMEXP/niak/tree/issue202

associated issue is there: https://github.com/SIMEXP/niak/issues/202

Planning on wrapping that up this week.

pbellec commented 8 years ago

the reports are available in the master brain. Waiting on @poquirion to release niak-cog-beta

SIMEXP / cbrain-plugins-psom

Generate QC reports #11