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SIMEXP / fmri_predict

predicting fmri activaties from connectome
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warning issue when using ciftify package: h5py future warning #11

Closed zhangyu2ustc closed 5 years ago

zhangyu2ustc commented 5 years ago

/home/yuzhang/tensorflow-py3.6/lib/python3.6/site-packages/h5py/init.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type. from ._conv import register_converters as _register_converters

Solution: fixed the problem by:

upgrade the package

pip install h5py==2.8.0rc1

as listed in the website: https://github.com/h5py/h5py/issues/961

zhangyu2ustc commented 5 years ago

problems during package installation using pip:

Traceback (most recent call last): File "/home/yu/tensorflow-py3.6/bin/pip3", line 7, in from pip._internal import main File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/init.py", line 40, in from pip._internal.cli.autocompletion import autocomplete File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/cli/autocompletion.py", line 8, in from pip._internal.cli.main_parser import create_main_parser File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/cli/main_parser.py", line 12, in from pip._internal.commands import ( File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/commands/init.py", line 6, in from pip._internal.commands.completion import CompletionCommand File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/commands/completion.py", line 6, in from pip._internal.cli.base_command import Command File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/cli/base_command.py", line 23, in from pip._internal.index import PackageFinder File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_internal/index.py", line 15, in from pip._vendor.distlib.compat import unescape File "/home/yu/tensorflow-py3.6/lib/python3.6/site-packages/pip/_vendor/distlib/compat.py", line 85, in from html.parser import HTMLParser ModuleNotFoundError: No module named 'html.parser'; 'html' is not a package

Reason: Ciftify has a html.py file which has conflicting issues with the pip package rename it: mv /home/yu/tensorflow-py3.6/lib/python3.6/site-packages/ciftify/html.py /home/yu/tensorflow-py3.6/lib/python3.6/site-packages/ciftify/html_ciftify.py

might cause issues in the future