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SINTEF
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pyopia
Python Ocean Particle Image Analysis
https://pyopia.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Logging handling is not multiprocess safe
#331
nepstad
opened
3 weeks ago
0
Modifying "process_file_list" function in cli.py
#330
arsalanmstn
closed
3 weeks ago
1
Unable to download silcam_database.zip from exampledata.py
#329
arsalanmstn
opened
1 month ago
2
296 Add memory usage to PyOPIA log output
#328
nepstad
opened
1 month ago
0
326 Replace threading with multiprocessing for multiple chunks
#327
nepstad
closed
1 month ago
0
Replace threading with multiprocessing when processing multiple chunks
#326
nepstad
closed
1 month ago
0
Dark im_corrected if using ".bmp" raw images #324
#325
arsalanmstn
closed
1 month ago
3
Dark im_corrected if using ".bmp" raw images
#324
arsalanmstn
closed
1 month ago
1
322 Add striping strategy to chunking the image file list
#323
nepstad
closed
2 months ago
0
Add more strategies for chunking file list to speed up processing with imbalanced dataset
#322
nepstad
closed
2 months ago
0
320 Add more timing output to log and command line interface
#321
nepstad
closed
2 months ago
0
Add more timing info to PyOPIA output and logging
#320
nepstad
closed
2 months ago
0
318 dictionary lookups in classifypreprocessing may slow down processing
#319
nepstad
closed
2 months ago
0
Dictionary lookups in Classify.preprocessing may slow down processing
#318
nepstad
closed
2 months ago
0
316 Add config option to load image list from a text file
#317
nepstad
closed
2 months ago
0
Add command line option for loading file list to process
#316
nepstad
closed
2 months ago
1
Add new background correction function based on dividing the imraw by imbg
#315
arsalanmstn
closed
1 month ago
0
New background correction option and improved junge calculation
#314
arsalanmstn
closed
1 month ago
7
RuntimeWarning during the processing from get_j/statistics.py: divide by zero encountered in log p = np.polyfit(np.log(dias[ind]), np.log(number_distribution[ind]), 1)
#313
arsalanmstn
closed
1 month ago
1
311 Always write at least one NaN line to stats file. Fix image_stats…
#312
nepstad
closed
2 months ago
0
Not writing image_stats for zero-particle images when append=false
#311
nepstad
closed
2 months ago
0
Add more info to error messages in log
#310
nordam
opened
2 months ago
1
298 Add progress bar, load datasets and merge manually
#309
nepstad
closed
2 months ago
0
Investigate ncrcat for combining stats files?
#308
nordam
closed
1 month ago
1
"modify_config" in cli.py not working for chaing raw_files or modifying arguments that are not float
#307
emlynjdavies
closed
2 months ago
0
docstring for SilCamLoad image_format is lowercase, but should be upper case string inputs
#306
emlynjdavies
opened
2 months ago
0
Change the cli.py
#305
arsalanmstn
closed
2 months ago
0
Tell user why the remaining steps are being skipped
#304
nordam
opened
2 months ago
1
Add version information to PyOPIA command line interface
#303
nepstad
opened
2 months ago
1
Modify cli.py file
#302
arsalanmstn
closed
2 months ago
2
broken reference link in parallell-processing documentation
#301
emlynjdavies
opened
2 months ago
0
Add PyOPIA reference publication to README and documentation
#300
nepstad
opened
2 months ago
2
make load_stats always return xarray DataSet
#299
emlynjdavies
closed
2 months ago
0
Add progress bar for merge_and_save_mfdataset (and perhaps accept a kwarg to specify output filename?
#298
nordam
closed
2 months ago
2
load_stats functionality is unclear
#297
emlynjdavies
closed
2 months ago
0
Suspected memory leak when processing large datasets with append=false
#296
nordam
opened
2 months ago
2
Better documentation of acceptable SilCam filenames
#295
emlynjdavies
closed
2 months ago
0
Better documentation of acceptable SilCam filenames
#294
emlynjdavies
closed
2 months ago
0
clearer merge_and_save_mfdataset docstring
#293
emlynjdavies
closed
2 months ago
0
The docstring in merge_and_save_mfdataset isn't completely clear
#292
emlynjdavies
closed
2 months ago
0
Support other filename prefixes than 'D'
#291
nordam
closed
1 month ago
5
Passing kwargs through StatsH5 to StatsToDisc
#290
nordam
closed
2 months ago
0
StatsH5 is no longer working
#289
emlynjdavies
closed
2 months ago
0
Move to more flexible image containers for SilCam
#288
nepstad
opened
2 months ago
0
Handle missing correctbackground section in config for cli chunk setup
#287
nepstad
closed
2 months ago
1
Image conversion: Bayer RG8 to RGB
#286
arsalanmstn
closed
2 months ago
2
update docs
#285
emlynjdavies
closed
2 months ago
0
Add deprecation waring to pyopia.io.StatsH5
#284
emlynjdavies
closed
2 months ago
0
Fix bug in pyopia merge-mfdata
#283
emlynjdavies
closed
2 months ago
0
pyopia process fails if correctbackground step is missing
#282
emlynjdavies
closed
2 months ago
1
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