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SINTEFMedtek / CustusX

Research Platform for Image-Guided Therapy
http://www.custusx.org
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segment fault/Ubuntu 16.04 #11

Open blacksino opened 5 years ago

blacksino commented 5 years ago

Hello,I am building up this project.And we met some troubles：after we compiled the code and ran the executable “CustusX”，it crashed（SegmentFault）。I have no idea about how to handle this..

here is the GDB LOG：

(gdb) bt

0 0x00007f7c114aef68 in ?? ()

from /home/bme305/Qt5.5.1/5.5/gcc_64/lib/libQt5Core.so.5

1 0x00007f7c112f6b4c in QString::toUtf8_helper(QString const&) ()

from /home/bme305/Qt5.5.1/5.5/gcc_64/lib/libQt5Core.so.5

2 0x0000000000a43fde in QString::toUtf8() const & ()

3 0x0000000000a4402b in QString::toStdString[abi:cxx11]() const ()

4 0x0000000000d5e7c8 in operator<<(std::ostream&, QString const&) ()

5 0x0000000000d62810 in cx::operator<<(std::ostream&, cx::MESSAGE_LEVEL const&) ()

6 0x0000000000ab6779 in bool boost::detail::lexical_istream_limited_src<char, std::char_traits, true, 2ul>::shl_input_streamable(cx::MESSAGE_LEVEL const&) ()

7 0x0000000000ab6527 in bool boost::detail::lexical_istream_limited_src<char, std::char_traits, true, 2ul>::operator<< (cx::MESSAGE_LEVEL const&) ()

8 0x0000000000ab60ca in boost::detail::lexical_converter_impl<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>::try_convert(cx::MESSAGE_LEVEL const&, std::__cxx11::basic_string<char, std::char_traits, std::allocator >&) ()

9 0x0000000000ab59c8 in bool boost::conversion::detail::try_lexical_convert<std::cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>(cx::MESSAGE_LEVEL const&, std::cxx11::basic_string<char, std::char_traits, std::allocator >&) ()

---Type to continue, or q to quit---

10 0x0000000000ab538c in std::__cxx11::basic_string<char, std::char_traits, std::allocator > boost::lexical_cast<std::__cxx11::basic_string<char, std::char_traits, std::allocator >, cx::MESSAGE_LEVEL>(cx::MESSAGE_LEVEL const&) ()

11 0x0000000000ab463d in std::__cxx11::basic_string<char, std::char_traits, std::allocator > string_cast(cx::MESSAGE_LEVEL const&) ()

12 0x0000000000ab3966 in QString qstring_cast(cx::MESSAGE_LEVEL const&) ()

13 0x0000000000d7a293 in cx::Message::getPrintableMessage() const ()

14 0x0000000000cee49d in cx::Reporter::sendMessage(cx::Message) ()

15 0x0000000000d7922f in cx::MessageLogger::~MessageLogger() ()

16 0x0000000000b7c5ad in cx::PluginFrameworkManager::handlePluginException(QString const&, ctkException const&) ()

17 0x0000000000b7baf1 in cx::PluginFrameworkManager::install(QString const&)

()

18 0x0000000000b7a797 in cx::PluginFrameworkManager::loadState() ()

19 0x0000000000b76202 in cx::LogicManager::initializeServices() ()

20 0x0000000000b76019 in cx::LogicManager::initialize(boost::shared_ptr) ()

21 0x0000000000a1e1c1 in main ()

MY OS is Ubuntu16.04，LTS; QT version：5.5.1 cmake log：

-- 'BeforeCMAKE_CXX_FLAGS'

-- 'CX_CMAKE_CXX_FLAGS'

-- 'AfterCMAKE_CXX_FLAGS'

-- DirDefs:

-- The Ninja was used.

-- Setting CX_SYSTEM_BASE_NAME=[CustusX]

-- Setting CX_SYSTEM_DEFAULT_APPLICATION=[CustusX]

fatal: 没有标签准确匹配 '7f1def756e5d44370192c35f3ee7ae6cb3cd65f9'

-- CustusX Alpha Version: 2019.04.11-dev+develop.7f1d

-----------------CX_INSTALL_ROOT_DIR: CustusX

-----------------CX_INSTALL_BINARY_DIR: CustusX/bin

-----------------CX_INSTALL_CONFIG_DIR: CustusX/config

-----------------CX_BUNDLE_NAME: CustusX

-- Boost version: 1.58.0

-- Trying to find DCMTK expecting DCMTKConfig.cmake

-- Trying to find DCMTK expecting DCMTKConfig.cmake - ok

-- Generated: /home/bme305/dev/cx/CX/build_Release/source/plugins/DGraphInput-alldep-withext.txt

-- Checking to see if CXX compiler accepts flag -fvisibility=hidden

-- Checking to see if CXX compiler accepts flag -fvisibility=hidden - yes

-- Generating master Catch exe.

-- Adding tests from:

-- cxtestResource

-- cxtestResourceUsReconstructionTypes

-- cxtestResourceVisualization

-- cxtestOpenIGTLinkUtilities

-- cxtestUtilities

-- cxtestResourceWidgets

-- cxtestGrabber

-- cxtestFilter

-- cxtestLogicManager

-- cxtestGui

-- cxtest_org_custusx_core_patientmodel

-- cxtest_org_custusx_core_view

-- cxtest_org_custusx_core_tracking

-- cxtest_org_custusx_core_tracking_igstk

-- cxtest_org_custusx_core_openigtlink3

-- cxtest_org_custusx_core_video

-- cxtest_org_custusx_core_filemanager

-- cxtest_org_custusx_dicom

-- cxtest_org_custusx_usreconstruction_vnncl

-- cxtest_org_custusx_usreconstruction_pnn

-- cxtest_org_custusx_registration

-- cxtest_org_custusx_registration_method_manual

-- cxtest_org_custusx_registration_method_landmark

-- cxtest_org_custusx_registration_method_bronchoscopy

-- cxtest_org_custusx_registration_method_centerline

-- cxtest_org_custusx_registration_method_commandline

-- cxtest_org_custusx_usreconstruction

-- cxtest_org_custusx_acquisition

-- cxtest_org_custusx_calibration

-- cxtest_org_custusx_help

-- cxtest_org_custusx_filter_accusurf

-- cxtest_org_custusx_ceetron

-- cxtest_org_custusx_filter_airwaysfromcenterline

-- Qt5 plugin directory:/home/bme305/Qt5.5.1/5.5/gcc_64/plugins

-- QT_PLUGINS_DIR: /home/bme305/Qt5.5.1/5.5/gcc_64/plugins

-- QT_LIBS_DIR: /home/bme305/Qt5.5.1/5.5/gcc_64/lib

-- PATTERN=CustusX/bin/*.so

-- PATTERN=CustusX/bin/plugins/*.so

--

Configuration for CustusX 2019.04.11-dev+develop.7f1d

Build Settings:

    System Base Name: CustusX

    Built on system: Linux-4.15.0-43-generic  x86_64

    Build type: 

    Shared Libraries: 

    Coverage: OFF

    Dev docs: OFF

    User docs: ON

Libraries:

    Qt Version 5.5.1

    VTK Version: 7.1.0

    ITK Version: 4.12.0

    CTK Version: 0.1.0

    OpenCV Version: 3.3.0

    CMake Version: 3.12.0

    IGSTK Version: 5.2.0

    OpenIGTLink Version: 3.1.0

    Boost Version: 1.58.0

    OpenCL Version: 

    OpenGL Version:  3.0 Mesa 18.0.5

    Eigen Version: 3.3.5

    OpenCL Utility Library: OFF

Plugins:

    org.custusx.acquisition ON

    org.custusx.calibration ON

    org.custusx.ceetron ON

    org.custusx.core.filemanager ON

    org.custusx.core.openigtlink3 ON

    org.custusx.core.patientmodel ON

    org.custusx.core.state ON

    org.custusx.core.tracking ON

    org.custusx.core.tracking.system.igstk ON

    org.custusx.core.video ON

    org.custusx.core.view ON

    org.custusx.dicom ON

    org.custusx.example OFF

    org.custusx.filter.accusurf ON

    org.custusx.filter.airways OFF

    org.custusx.filter.airwaysfromcenterline ON

    org.custusx.filter.routetotarget ON

    org.custusx.help ON

    org.custusx.registration ON

    org.custusx.registration.gui ON

    org.custusx.registration.method.bronchoscopy ON

    org.custusx.registration.method.centerline ON

    org.custusx.registration.method.commandline ON

    org.custusx.registration.method.landmark ON

    org.custusx.registration.method.manual ON

    org.custusx.registration.method.plate ON

    org.custusx.registration.method.pointcloud ON

    org.custusx.registration.method.vessel ON

    org.custusx.training ON

    org.custusx.usreconstruction ON

    org.custusx.usreconstruction.pnn ON

    org.custusx.usreconstruction.vnncl ON

    org.custusx.virtualbronchoscopy ON

    org.custusx.webserver OFF

-- **** Generating user qthelp documentation...

-- **** Generating user html documentation...

-- Configuring done

CMake Warning (dev) in source/plugins/org.custusx.dicom/CMakeLists.txt:

Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link

interface. Run "cmake --help-policy CMP0022" for policy details. Use the

cmake_policy command to set the policy and suppress this warning.

Target "org_custusx_dicom" has an INTERFACE_LINK_LIBRARIES property which

differs from its LINK_INTERFACE_LIBRARIES properties.

INTERFACE_LINK_LIBRARIES:

CTKPluginFramework;cxGUIExtenderService;cxResourceWidgets;cxResource;CTKDICOMWidgets;CTKDICOMCore;cxPluginUtilities;cxResourceVisualization;Qt5::Core;dl;Qt5::Widgets;Qt5::Xml;Qt5::OpenGL;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so>;$<$<NOT:$<CONFIG:DEBUG>>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so>;$<$<CONFIG:DEBUG>:/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so>;-lpthread;Qt5::Sql;Qt5::Gui;vtkCommonCore;vtkCommonDataModel;vtkCommonSystem;vtkIOImage;vtkInteractionStyle;vtkRenderingAnnotation;vtkRenderingCore;vtkRenderingOpenGL2;vtkRenderingFreeType;Qt5::Sql;Qt5::Concurrent

LINK_INTERFACE_LIBRARIES: CTKPluginFramework;cxGUIExtenderService;cxResourceWidgets;cxResource;CTKDICOMWidgets;CTKDICOMCore;cxPluginUtilities;cxResourceVisualization;Qt5::Core;dl;Qt5::Widgets;Qt5::Xml;Qt5::OpenGL;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmpstat.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmsr.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmtls.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmqrdb.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmnet.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmjpeg.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimage.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmimgle.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libdcmdata.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/liboflog.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libofstd.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg12.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg16.so;/home/bme305/dev/cx/CTK/build_Release/DCMTK-build/lib/libijg8.so;-lpthread;Qt5::Sql;Qt5::Gui;vtkCommonCore;vtkCommonDataModel;vtkCommonSystem;vtkIOImage;vtkInteractionStyle;vtkRenderingAnnotation;vtkRenderingCore;vtkRenderingOpenGL2;vtkRenderingFreeType;Qt5::Sql;Qt5::Concurrent

This warning is for project developers. Use -Wno-dev to suppress it.

-- Generating done -- Build files have been written to: /home/bme305/dev/cx/CX/build_Release

If you need more information，please let me know，we sincerely ask you for help，thanks！

olevs commented 5 years ago

The crash looks a bit stange.

  1. Do you get the same error when downloading CustusX (for Ubuntu 16.04) from custusx.org? https://www.custusx.org/uploads/releases/18.04/Linux/ or https://www.custusx.org/uploads/releases/nightly/Linux/
  2. Du you use the the CustusX python installer script when compiling CustusX? https://www.custusx.org/uploads/developer_doc/nightly/build_instructions.html
  3. Can you also provide the command line output (if any) that CustusX prints during startup?
  4. You can also try building CustusX with debug information to get a more detailed call stack.