SIPEC-Animal-Data-Analysis / idtracking_gui

MIT License
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Maybe because I am a beginner, I would like to ask you to solve the following problems #11

Open Shengyuan-Cai opened 3 years ago

Shengyuan-Cai commented 3 years ago

I've solved some of the problems,

  1. For example, your requirement file does not cover the package scikit-video, so no matching distribution found for SKvideo is displayed:Import scikit-video: PIP install scikit-video is required

  2. In addition, I also appear the following error:

    Traceback (most recent cali last):

    File "gui.py",line 1013,in

    ​ main()

    File "gui.py",line 944,in main

    ​ names = names.split(",")

    AttributeError: 'NoneType' object has no attribute 'split'

  3. And sometimes the following error occurs:

    LOADING NEXT VIDEO

    Traceback (most recent call last):

    File "gui.py" , line 1013,in

    main()

    File "gui.py" . line 976,in main

    masks = load_mask(video_path)

    with open(video_path +"SegResults.pkl","rb") as handle:

    FileNotFoundError : [Errno 2] No such file or directory: " /segResults.pkl'

  4. In addition, we find that the merged. Json format you use is different from the JSON file format VGG uses for image and video segmentation and annotation. We don't know how to do your JSON file and video segmentation, because we want to make our own data set, thank you。 This is yours: {"_via_settings": {"ui": {"annotation_editor_height": 25, "annotation_editor_fontsize": 0.8, "leftsidebar_width": 23, "image_grid": {"img_height": 80, "rshape_fill": "none", "rshape_fill_opacity": 0.3, "rshape_stroke": "yellow", "rshape_stroke_width": 2, "show_region_shape": true, "show_image_policy": "all"}, "image": {"region_label": "via_region_id", "region_color": "__via_default_region_color__", "region_label_font": "10px Sans", "on_image_annotation_editor_placement": "NEAR_REGION"}}, "core": {"buffer_size": 18, "filepath": {}, "default_filepath": ""}, "project": {"name": "via_project_31May2021_13h29m"}}, "_via_img_metadata": {"vlcsnap-2021-05-24-22h05m59s689.png1169380": {"filename": "vlcsnap-2021-05-24-22h05m59s689.png", "size": 1169380, "regions": [{"shape_attributes": {"name": "polyline", "all_points_x": [69, 68, 60, 75, 98, 131, 164, 206, 256, 310, 310, 247, 203, 171, 171, 176, 172, 159, 140, 133, 123, 124, 116, 106, 88, 80, 70], "all_points_y": [83, 128, 151, 156, 227, 267, 280, 323, 342, 349, 346, 330, 308, 272, 242, 237, 219, 214, 187, 144, 136, 123, 121, 99, 82, 73, 80]}, "region_attributes": {"mouse": {"mouse": true}}}, {"shape_attributes": {"name": "polyline", "all_points_x": [247, 256, 260, 277, 304, 330, 363, 419, 467, 508, 510, 487, 404, 369, 367, 371, 367, 364, 354, 338, 326, 299, 293, 268, 250, 247], "all_points_y": [115, 139, 162, 168, 217, 244, 255, 295, 324, 343, 336, 325, 273, 248, 229, 215, 186, 164, 154, 156, 134, 129, 116, 109, 101, 111]}, "region_attributes": {"mouse": {"mouse": true}}}, {"shape_attributes": {"name": "polyline", "all_points_x": [436, 439, 432, 442, 446, 462, 483, 512, 550, 594, 651, 713, 714, 660, 604, 551, 548, 565, 556, 546, 522, 503, 488, 477, 466, 456, 444, 437], "all_points_y": [576, 613, 622, 637, 664, 680, 715, 731, 740, 768, 773, 761, 754, 761, 758, 732, 714, 702, 692, 678, 660, 637, 610, 591, 581, 566, 565, 575]}, "region_attributes": {"mouse": {"mouse": true}}},

And this is mine: {"project":{"pid":"VIA_PROJECT_ID","rev":"VIA_PROJECT_REV_ID__","rev_timestamp":"VIA_PROJECT_REV_TIMESTAMP__","pname":"Unnamed VIA Project","creator":"VGG Image Annotator (http://www.robots.ox.ac.uk/~vgg/software/via)","created":1631693860281,"vid_list":["1","2"]},"config":{"file":{"loc_prefix":{"1":"","2":"","3":"","4":""}},"ui":{"file_content_align":"center","file_metadata_editor_visible":true,"spatial_metadata_editor_visible":false,"spatial_region_label_attribute_id":"","gtimeline_visible_row_count":"4"}},"attribute":{"1":{"aname":"mouse","anchor_id":"FILE1_Z0_XY1","type":4,"desc":"","options":{"0":"sad","1":"time","2":"mouse"},"default_option_id":""},"2":{"aname":"sad","anchor_id":"FILE1_Z0_XY1","type":3,"desc":"","options":{"0":"animal","1":"env"},"default_option_id":""},"3":{"aname":"describe","anchor_id":"FILE1_Z0_XY1","type":1,"desc":"","options":{"0":""},"default_option_id":""},"4":{"aname":"time","anchor_id":"","type":1,"desc":"","options":{},"default_option_id":""}},"file":{"1":{"fid":"1","fname":"vlcsnap-2019-07-05-16h09m02s697.png","type":2,"loc":1,"src":""},"2":{"fid":"2","fname":"vlcsnap-2019-07-05-16h09m11s787.png","type":2,"loc":1,"src":""}},"metadata":{"1_mIPF58od":{"vid":"1","flg":0,"z":[],"xy":[2,541.611,110.861,69.393,55.853],"av":{"1":"2","2":"0","3":"raw"}},"2_bCVkpaEJ":{"vid":"2","flg":0,"z":[],"xy":[2,278.422,238.647,48.237,45.699],"av":{"1":"2","2":"0","3":"raw\n"}}},"view":{"1":{"fid_list":["1"]},"2":{"fid_list":["2"]}}}

{"project":{"pid":"VIA_PROJECT_ID","rev":"VIA_PROJECT_REV_ID__","rev_timestamp":"VIA_PROJECT_REV_TIMESTAMP__","pname":"Unnamed VIA Project","creator":"VGG Image Annotator (http://www.robots.ox.ac.uk/~vgg/software/via)","created":1631693860281,"vid_list":["1","2"]},"config":{"file":{"loc_prefix":{"1":"","2":"","3":"","4":""}},"ui":{"file_content_align":"center","file_metadata_editor_visible":true,"spatial_metadata_editor_visible":false,"spatial_region_label_attribute_id":"","gtimeline_visible_row_count":"4"}},"attribute":{"1":{"aname":"mouse","anchor_id":"FILE1_Z0_XY1","type":4,"desc":"","options":{"0":"sad","1":"time","2":"mouse"},"default_option_id":""},"2":{"aname":"sad","anchor_id":"FILE1_Z0_XY1","type":3,"desc":"","options":{"0":"animal","1":"env"},"default_option_id":""},"3":{"aname":"describe","anchor_id":"FILE1_Z0_XY1","type":1,"desc":"","options":{"0":""},"default_option_id":""},"4":{"aname":"time","anchor_id":"","type":1,"desc":"","options":{},"default_option_id":""}},"file":{"1":{"fid":"1","fname":"vlcsnap-2019-07-05-16h09m02s697.png","type":2,"loc":1,"src":""},"2":{"fid":"2","fname":"vlcsnap-2019-07-05-16h09m11s787.png","type":2,"loc":1,"src":""}},"metadata":{"1_mIPF58od":{"vid":"1","flg":0,"z":[],"xy":[2,541.611,110.861,69.393,55.853],"av":{"1":"2","2":"0","3":"raw"}},"2_bCVkpaEJ":{"vid":"2","flg":0,"z":[],"xy":[2,278.422,238.647,48.237,45.699],"av":{"1":"2","2":"0","3":"raw\n"}}},"view":{"1":{"fid_list":["1"]},"2":{"fid_list":["2"]}}}

damaggu commented 3 years ago

Hi, thanks for reaching out. Can you create a pull request for things you solved? I will look into the remaining issues as soon as possible.

Shengyuan-Cai commented 3 years ago

I just solve the first one ,I suggest you can add pip install scikit-video in requirement.txt,but others I also need your help!