tutorial in Gromacs, example 4

[xih72]

https://sirahff.github.io/documentation/Tutorials%20gromacs.html#closed-circular-dna-in-explicit-solvent 4.2. PDB to GROMACS format gmx pdb2gmx -f ccdna_cg.pdb -o ccdna_cg.gro

Program: gmx pdb2gmx, version 2018 Source file: src/gromacs/gmxpreprocess/pdb2gmx.cpp (line 753)

Fatal error: Atom PX in residue DCX 1 was not found in rtp entry CX5 with 5 atoms while sorting atoms. .

For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors

[SIRAHFF]

You got this error because of a problem with the spaces in the previous command.

We changed it in the documentation. It should work now.

[xih72]

It works now. You can close this ticket.