SJTU-CGM HUPAN issues - Githubissues

SJTU-CGM / HUPAN

Human pan-genome analysis pipeline

http://cgm.sjtu.edu.cn/hupan/

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issues

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When using soapdenovo for assembly, rmHigh throws Warnings: "cannot find assembly file in..." when running alignContig later.

#13 hyBio opened 2 years ago
2
Error in hupan alignContig

#12 Kennyluo4 opened 3 years ago
0
Error While installing

#11 bassanio closed 4 years ago
0
missing config_file (or maker_config)

#10 sebetso388 opened 4 years ago
1
Missing *.scafSeq file in the assemble_results Directory

#9 sebetso388 closed 4 years ago
5
Can hupan alignContig dealt with the samples at the same time or Using multithread

#8 liufy11 closed 4 years ago
3
Uninitialized value $1 and $pre_gid error with `pTpG` function

#7 Boer223 closed 4 years ago
2
‘’hupan assemSta ‘’ run too long time and use too lagre memory

#6 chenshixuan opened 4 years ago
4
‘getUnalnCtg’ function has some new problem

#5 chenshixuan closed 4 years ago
2
“Extract non-reference sequences from assembled contigs” couldn't find assembly file

#4 chenshixuan closed 4 years ago
4
‘getUnalnCtg’ function has some problem!

#3 Boer223 opened 5 years ago
9
In "hupan assemble sga", the "-m" option is not work !!!

#2 Boer223 closed 4 years ago
2
Issue while running make command - executable files ccov,bam2cov not generated

#1 Vithyanatarajan closed 5 years ago
1