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SMLC-NYSBC / TARDIS

Transformer And Rapid Dimensionless Instance Segmentation
https://smlc-nysbc.github.io/TARDIS/
MIT License
9 stars 2 forks source link

Actin Prediction #85

Open lthevs opened 3 weeks ago

lthevs commented 3 weeks ago

Hi there,

There is an issue with actin prediction. It starts at line 286 of predictor.py, because when model==Actin, it gets set to model==Microtubule, when I suspect it should be set to model=="actin_3d". However, when I change that line in my installation, it still fails (it works when you set it to one of the working keys like microtubule3d). I suspect this is because on the AWS server, the actin model doesn't have a V version number and thus the key isn't working properly, but I'm not entirely sure of this. Any advice would be greatly appreciated! My tardis model version installation is 0.3.2. Thank you!

Best, Liam Theveny

RRobert92 commented 3 weeks ago

Hi Liam, Great to here you want to try TARDIS.

About the versioning on AWS its true that AWS did not have yet folder named V_, I've updated it now, also updated the code to correctly use the actin_3d model. Thank you for spotting this out.

I've tried to use now the default setting for tardis_actin -dir . and it is working now.

There is a new pip version 0.3.7 now, try to install it. Let me know if after update you still see this issue. And also keep in mind Acin model is still in development as we collecting more data for training a general model for it.

lthevs commented 3 weeks ago

Works now, thanks so much for the quick response!