BiocParallel error in Simulate spot-resolution spatial data for cell-type deconvolution

SONGDONGYUAN1994 / scDesign3

scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics

https://songdongyuan1994.github.io/scDesign3/docs/index.html

MIT License

81 stars 23 forks source link

BiocParallel error in Simulate spot-resolution spatial data for cell-type deconvolution #30

Open RadishTheVeggie opened 8 months ago

RadishTheVeggie commented 8 months ago

Hi, I ran into the a BiocParallel error when trying to replicate the code in https://songdongyuan1994.github.io/scDesign3/docs/articles/scDesign3-spatial-deconvolution.html.

All the code is the same as in the github Simulate spot-resolution spatial data for cell-type deconvolution article but does not seem to be working.

Thanks.

SONGDONGYUAN1994 commented 8 months ago

@RadishTheVeggie Sorry for the late reply. May I ask your system for running this job? You can set ncore = 1 to see if it works. There are other options for Parallel computing, which you may have a try.

Best, Dongyuan