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SPAAM-community / AncientMetagenomeDir

Repository containing lists of all published ancient metagenomic (and related) samples and libraries
http://www.spaam-community.org/AncientMetagenomeDir/
Creative Commons Attribution 4.0 International
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Murchie 2021 #1000

Closed ktozdogan closed 1 year ago

ktozdogan commented 1 year ago

Publication DOI or URL

10.1038/s41467-021-27439-6

Additional context

NCBI SRA BioProject: PRJNA722670, Accessions: SRR14265632– SRR14265692

jfy133 commented 1 year ago

this is not shotgun sequenced libraries if I understand correctly?

We used the PalaeoChip Arctic-1.0 plant and animal baits36 to capture enrich these libraries for chloroplast barcoding loci (trnL, matK, rbcL) of Arctic/Subarctic plants and for whole mitochondrial genomes (or singular loci where mitogenomes were unavailable at the time of bait-design in 2017) of extinct and extant northern animals (focused on megafauna). Libraries were sequenced on an Illumina HiSeq 1500 with 2 × 90 paired-end read chemistry.

ktozdogan commented 1 year ago

It is hybridization capture. I was hesitant but I have seen Slon 2017 on the database, that one is hybridization capture as well. Should I avoid adding those?

jfy133 commented 1 year ago

Slon also uploaded shallow shotgun, and it's only that data we included