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SPAAM-community / AncientMetagenomeDir

Repository containing lists of all published ancient metagenomic (and related) samples and libraries
http://www.spaam-community.org/AncientMetagenomeDir/
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Gelabert 2021 #1001

Closed ktozdogan closed 1 year ago

ktozdogan commented 1 year ago

Publication DOI or URL

10.1016/j.cub.2021.06.023

Additional context

ENA: PRJEB41420

jfy133 commented 1 year ago

This one I'm sort of on the fence about... they don't really do metagenomics as a whole analysis but on the flip side they do make their whole raw data available (for pop-gen :scream: ).

Could you post this on slack and get community opinion?

jfy133 commented 1 year ago

Definitely a metagenomics sample, and would argue a metagenomics paper. As you say, there was a Centrifuge analysis in addition to the pop-gen stuff. One could make a similar comment about pathogen metagenomics papers, where the primary focus is often phylogeography, locus presence/absence, selection, etc, rather than just a metagenomic community reconstruction. :wink:

@pheintzman

I agree with Pete that when the sample is metagenomic one, we should include it. Tthis is primarily a sediment sample, not some petrous bone. So we expect a similar signal as for a sediment sample that was studied for microbes and not mammals.

@alexhbnr

So we will include!