Closed DianaSpurite closed 1 year ago
Added Swali 2023 samples and libraries. Capture removed, only shotgun added. Instrument Model differs in what's reported in the paper and listed in the ENA table.
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Unable to parse string "ERR11262425" at position 2279 |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Unable to parse string "ERR11262425 fastq_all" at position 2279 |
ancientmetagenome-environmental_libraries.tsv
is valid
Do not know how to deal with an error - "Unable to parse string "ERR11262425" at position 2279"
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Unable to parse string "ERR11262423" at position 2278 |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Unable to parse string "ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/023/ERR11262423/ERR11262423.fastq.gz" at position 2278 |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Unable to parse string "0df3bc0db4d6f92b38c9eb3c9b0d4511" at position 2278 |
ancientmetagenome-environmental_libraries.tsv
is valid
@DianaSpurite spaces and not tabs all over the place, lets review your workflow at our next meeting
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Dataset Parsing Error | ancientsinglegenome-hostassociated_libraries.tsv | - | - | Error tokenizing data. C error: Expected 20 fields in line 2278, saw 21 |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
Pull Request
This PR is for a
For the following list(s):
New Publication
Publication Information
This pull request is to add samples from the following publication(s):
This is to close #1083
Checklist
github-bot
)?@SPAAM-community/ancientmetagenomedir
?/assets/enums
, e.g. material or archive)? If so the corresponding PR is here: