Closed DianaSpurite closed 1 year ago
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | ERS14555610, ERS14555611, ERS14555612, ERS14555613, ERS14555614, ERS14555615, ERS14555616, ERS14555617 | archive_accession | 588 | 'ERS14555610, ERS14555611, ERS14555612, ERS14555613, ERS14555614, ERS14555615, ERS14555616, ERS14555617' does not match '^[\S]+$' |
Schema Validation Error | ERS14555595, ERS14555596, ERS14555597, ERS14555598, ERS14555599, ERS14555600, ERS14555601, ERS14555602, ERS14555603, ERS14555604 | archive_accession | 589 | 'ERS14555595, ERS14555596, ERS14555597, ERS14555598, ERS14555599, ERS14555600, ERS14555601, ERS14555602, ERS14555603, ERS14555604' does not match '^[\S]+$' |
Schema Validation Error | ERS14555669, ERS14555670, ERS14555671 | archive_accession | 590 | 'ERS14555669, ERS14555670, ERS14555671' does not match '^[\S]+$' |
Schema Validation Error | ERS14555624, ERS14555625, ERS14555626 | archive_accession | 591 | 'ERS14555624, ERS14555625, ERS14555626' does not match '^[\S]+$' |
Schema Validation Error | ERS5823086, ERS14555637, ERS14555638 | archive_accession | 594 | 'ERS5823086, ERS14555637, ERS14555638' does not match '^[\S]+$' |
Schema Validation Error | ERS14555652, ERS14555653, ERS14555654 | archive_accession | 595 | 'ERS14555652, ERS14555653, ERS14555654' does not match '^[\S]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
Deleted spaces between ERS's
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
I'm goibng to have to push this to the next release, I can't understand the methodsw of the paper to know which eRS/ERR numbres went into the final genomes :(
Why the "checks have failed"?
Overenthusiastic version pinning :grimacing:
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
Waiting on final answers from first author
Pull Request
This PR is for a
For the following list(s):
New Publication
Publication Information
This pull request is to add samples from the following publication(s): https://doi.org/10.1016/j.isci.2023.106787
This is to close #1078
Checklist
github-bot
)?@SPAAM-community/ancientmetagenomedir
?/assets/enums
, e.g. material or archive)? If so the corresponding PR is here: