Closed DianaSpurite closed 1 year ago
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 588 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 589 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 2304 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2304 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2305 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2305 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2306 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2306 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2307 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2307 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 588 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 589 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 2304 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2304 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2305 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2305 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2306 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2306 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2307 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2307 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 2304 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2304 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2305 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2305 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2306 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2306 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | Neumann 2023 | project_name | 2307 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2307 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2304 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2305 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2306 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | data_publication_doi | 2307 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 588 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | publication_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
Schema Validation Error | austriaca.at/bronzezeit-pest-in-drasenhofen | sample_age_doi | 589 | 'austriaca.at/bronzezeit-pest-in-drasenhofen' does not match '^10.\d{4,9}\/[^,]+$' |
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
AMDirT, version 1.4.6
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
AMDirT, version 1.4.6
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
AMDirT, version 1.4.6
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
AMDirT, version 1.4.6
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.17/x64/bin/AMDirT", line 8, in
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
Bug was due to https://github.com/SPAAM-community/AMDirT/issues/125, I've pinned the JSONschema package for you and will keep that temporarily now
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
Invalid dataset ancientsinglegenome-hostassociated_libraries.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Neumann 2023 | project_name | 2308 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | Illumina HiSeq 4000 sequencing | instrument_model | 2308 | 'Illumina HiSeq 4000 sequencing' is not an accepted value. |
Please check [link=https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/instrument_model.json]https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/instrument_model.json[/link] | ||||
Schema Validation Error | Neumann 2023 | project_name | 2309 | 'Neumann 2023' does not match '^[a-zA-Z]+\d{4}[b-z]?$' |
Schema Validation Error | Illumina HiSeq 4000 sequencing | instrument_model | 2309 | 'Illumina HiSeq 4000 sequencing' is not an accepted value. |
Please check [link=https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/instrument_model.json]https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/instrument_model.json[/link] |
ancientmetagenome-environmental_libraries.tsv
is valid
Single stranded for the shotgun sequence liraries (2 missing from library list!), and this was with no UDG treatmenment
Added the two libraries
Also the Gansauge is also cited for the capture libraries so they should also be singlestranded not doublre
changed
Polymerase for Gansauge 2020 is: AccuPrime Pfx DNA
added
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
I approve on behalf of @GUNeumann as his requested changes overlapped with mine and/or has been addressed as requested
Pull Request
This PR is for a
For the following list(s):
New Publication
Publication Information
This pull request is to add samples from the following publication(s): https://austriaca.at/bronzezeit-pest-in-drasenhofen
This is to close #1092
Checklist
github-bot
)?@SPAAM-community/ancientmetagenomedir
?/assets/enums
, e.g. material or archive)? If so the corresponding PR is here: