adding in the missing data to clavel2023 disscused in issue #1110

[theHatIsBack]

Pull Request

This PR is for a

• [ ] New Publication(s)
• [x] Correction

For the following list(s):

• [ ] ancientmetagenome-environmental (README)
• [ ] ancientmetagenome-hostassociated (README)
• [x] ancientsinglegenome-hostassociated (README)

New Publication

Publication Information

This pull request is to add samples from the following publication(s):

This is to close

Checklist

• [ ] Publication is published (preprints currently not accepted)?
• [ ] Checked the publication is not already in the database?
• [ ] Checked samples in this publication are not previously published data (newly re-sequenced metagenomes are OK!)?
• [ ] Samples are shotgun metagenomes (hostassociated-singlegenome may also contain whole-genome enriched data)?
• [ ] Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
• [ ] Changelog is updated to include the publication under 'Added'?
• [ ] Pull request has passed validation checks (see automated comment from github-bot)?
• [ ] Review requested from @SPAAM-community/ancientmetagenomedir?
• [ ] (If applicable) Made a separate PR to add new categories to controlled lists (stored under /assets/enums, e.g. material or archive)? If so the corresponding PR is here:

[github-actions[bot]]

AMDirT, version 1.4.6

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

Invalid dataset ancientsinglegenome-hostassociated_samples.tsv

Error	Source	Column	Row	Message
Different Columns Error	Unnamed: 19	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 24	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 25	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 21	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 23	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 20	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}
Different Columns Error	Unnamed: 22	-	-	Dataset has different columns compared to schema {'Unnamed: 19', 'Unnamed: 24', 'Unnamed: 25', 'Unnamed: 21', 'Unnamed: 23', 'Unnamed: 20', 'Unnamed: 22'}

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

[jfy133]

@theHatIsBack I think you need to check the TSV, there appear to be multiple empty columns at the end!

[github-actions[bot]]

AMDirT, version 1.4.6

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_samples.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

[theHatIsBack]

Whoops, I must have accidentally added them when copying the rows into the tsv in excel. That should be fixed now.

[jfy133]

Awesome thanks @theHatIsBack ! Next you need to add to the libraries TSV and update the changelog :)

[github-actions[bot]]

AMDirT, version 1.4.6

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_samples.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

[github-actions[bot]]

AMDirT, version 1.4.6

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_samples.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

[jfy133]

Thanks @theHatIsBack and @alexhbnr !