Open LooseGoose99 opened 9 months ago
AMDirT, version 1.4.6
Invalid dataset ancientmetagenome-hostassociated_samples.tsv
Error | Source | Column | Row | Message |
---|---|---|---|---|
Schema Validation Error | Scotland | geo_loc_name | 1414 | 'Scotland' is not an accepted value. |
Please check [link=https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/geo_loc_name.json]https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/geo_loc_name.json[/link] | ||||
Schema Validation Error | Scotland | geo_loc_name | 1415 | 'Scotland' is not an accepted value. |
Please check [link=https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/geo_loc_name.json]https://spaam-community.github.io/AncientMetagenomeDir/assets/enums/geo_loc_name.json[/link] |
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
AMDirT, version 1.4.6
ancientmetagenome-hostassociated_samples.tsv
is valid
ancientsinglegenome-hostassociated_samples.tsv
is valid
ancientmetagenome-environmental_samples.tsv
is valid
ancientmetagenome-hostassociated_libraries.tsv
is valid
ancientsinglegenome-hostassociated_libraries.tsv
is valid
ancientmetagenome-environmental_libraries.tsv
is valid
Hi @LooseGoose99,
Thanks for adding your samples. There are a few minor things that need to changed before I can approve the merging:
sample age
column should be rounded to the nearest 100 (see https://github.com/SPAAM-community/AncientMetagenomeDir/tree/master/ancientmetagenome-hostassociated/samples#sample_age)Can be searched in wider literature, rough location is acceptable but use fewer decimals
. In case, your coordinates point to rough estimates, I would suggest to reduce the precision of longitude/latitude to two decimals.Is there already an update on uploading the unmerged sequencing data to ENA?
Pull Request
This PR is for a
For the following list(s):
New Publication
Publication Information
This pull request is to add samples from the following publication(s): 10.1038/s41564-023-01527-3
This is to close
Checklist
github-bot
)?@SPAAM-community/ancientmetagenomedir
?/assets/enums
, e.g. material or archive)? If so the corresponding PR is here: