GHA Autofill experiment - Githubissues

SPAAM-community / AncientMetagenomeDir

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

http://www.spaam-community.org/AncientMetagenomeDir/

Creative Commons Attribution 4.0 International

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GHA Autofill experiment #1145

Closed jfy133 closed 4 months ago

jfy133 commented 6 months ago

Adds a script that given a table and a project key in that table, it should run autofill of just those hits.

Using an open PR as a test run (Nishimura2024). Example command:

bash assets/utility/autofill-wrapper.sh -t ancientmetagenome-hostassociated -p Nishimura2024 -v

TODO:

get a github action to pick up the three variables from a message "@spaam-bot autofill ancientmetagenome-hostassociated Nishimura2024" -if generates output, then upload the file
if exits 1 because no hits, then upload warning message

jfy133 commented 6 months ago

@spaam-bot please autofill

jfy133 commented 6 months ago

@spaam-bot please autofill

jfy133 commented 6 months ago

@spaam-bot please autofill

jfy133 commented 6 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 5 months ago

@spaam-bot please autofill

jfy133 commented 4 months ago

@spaam-bot autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill breeakme breakme

jfy133 commented 4 months ago

@spaam-bot please autofill breeakme breakme

jfy133 commented 4 months ago

@spaam-bot please autofill breeakme breakme

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-ds

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-ds

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-ds

jfy133 commented 4 months ago

TODO:

Update Pull Request template with new instructions and simplify
Further tests (e.g. wrong project name, wrong table etc) -> may want to replace failure with text based if possible
Open a demo PR

jfy133 commented 4 months ago

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

github-actions[bot] commented 4 months ago

Autofill success! 🎉

Download the attempted autofilled library file by pressing this link.

You can now fill in the remainder of the columns, and append to the end of the corresponding library file. Please remember this service attempts to pull relevant metadata from the ENA, but metadata is not always correct!

[!WARNING] Always check accuracy of pre-filled columns before adding to the library table!