Armbrecht2022

[ilight1542]

Pull Request

This PR is for a

• [x] New Publication(s)
• [ ] Correction

For the following list(s):

• [x] ancientmetagenome-environmental (README, ask @thedir-team-dirt for advice)
• [ ] ancientmetagenome-hostassociated (README, ask @thedir-team-bugparty for advice)
• [ ] ancientsinglegenome-hostassociated (README, ask @thedir-team-pathopeeps for advice)

New Publication

Publication Information

This pull request is to add samples from the following publication(s): 10.1038/s41467-022-33494-4

This is to close #992

Checklist

• [x] Publication is published (preprints currently not accepted)?
• [x] Checked the publication is not already in the database?
• [x] Checked samples in this publication are not previously published data (newly re-sequenced metagenomes are OK!)?
• [x] Samples are shotgun metagenomes (hostassociated-singlegenome may also contain whole-genome enriched data)?
• [x] Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
• [x] Changelog is updated to include the publication under 'Added'?
• [ ] Pull request has passed validation checks (see automated comment from github-bot)?
• [x] Review requested from corresponding team (see list of lists above for each team)?
• [ ] (If applicable) Made a separate PR to add new categories to controlled lists (stored under /assets/enums, e.g. material or archive)? If so the corresponding PR is here:

If you do not know how to check errors in failed validation checks, expand here

Correction

This PR is for

• [ ] ancientmetagenome-hostassociated
• [ ] ancientsinglegenome-hostassociated
• [ ] ancientmetagenome-environmental

Reference

This pull request is to correct samples from the following publication(s):

This is to close

Description

The issue is:

Checklist

• [ ] Checked the corrected entries follow conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)
• [ ] Changelog is updated to include the publication under 'Changed'?
• [ ] Pull request has passed validation checks (see automated comment from github-bot)?
• [ ] Review requested from corresponding team (see list of lists above for each team)?

[jfy133]

@ilight1542 tests will fail as you're coming from a fork not locally. You'll need to run ancientMEtagenomeDirCheck/AMDirt locally to find the test errors

[ilight1542]

Closing to redo from internal branch (not fork) #996 , to aid in automated checks