Courtin2022

[ktozdogan]

Pull Request

This PR is for a

• [x] New Publication(s)
• [ ] Correction

For the following list(s):

• [x] ancientmetagenome-environmental (README, ask @thedir-team-dirt for advice)
• [ ] ancientmetagenome-hostassociated (README, ask @thedir-team-bugparty for advice)
• [ ] ancientsinglegenome-hostassociated (README, ask @thedir-team-pathopeeps for advice)

New Publication

Publication Information

This pull request is to add samples from the following publication(s): Courtin et al., 2022 10.1002/edn3.336

This is to close #932

Checklist

• [x] Publication is published (preprints currently not accepted)?
• [x] Checked the publication is not already in the database?
• [x] Checked samples in this publication are not previously published data (newly re-sequenced metagenomes are OK!)?
• [x] Samples are shotgun metagenomes (hostassociated-singlegenome may also contain whole-genome enriched data)?
• [x] Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
• [x] Changelog is updated to include the publication under 'Added'?
• [ ] Pull request has passed validation checks (see automated comment from github-bot)?
• [ ] Review requested from corresponding team (see list of lists above for each team)?
• [ ] (If applicable) Made a separate PR to add new categories to controlled lists (stored under /assets/enums, e.g. material or archive)? If so the corresponding PR is here:

If you do not know how to check errors in failed validation checks, expand here

Correction

This PR is for

• [ ] ancientmetagenome-hostassociated
• [ ] ancientsinglegenome-hostassociated
• [ ] ancientmetagenome-environmental

Reference

This pull request is to correct samples from the following publication(s):

This is to close

Description

The issue is:

Checklist

• [ ] Checked the corrected entries follow conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)
• [ ] Changelog is updated to include the publication under 'Changed'?
• [ ] Pull request has passed validation checks (see automated comment from github-bot)?
• [ ] Review requested from corresponding team (see list of lists above for each team)?

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ megaslump │ 388 │ feature │ 'megaslump' is not an │ │ │ │ │ accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/feature.json │ │ megaslump │ 385 │ feature │ 'megaslump' is not an │ │ │ │ │ accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/feature.json │ │ permafrost sediment │ 384 │ material │ 'permafrost sediment' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/material.json │ │ megaslump │ 386 │ feature │ 'megaslump' is not an │ │ │ │ │ accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/feature.json │ │ permafrost sediment │ 385 │ material │ 'permafrost sediment' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/material.json │ │ megaslump │ 387 │ feature │ 'megaslump' is not an │ │ │ │ │ accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/feature.json │ │ permafrost sediment │ 386 │ material │ 'permafrost sediment' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/material.json │ │ permafrost sediment │ 387 │ material │ 'permafrost sediment' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/material.json │ │ megaslump │ 384 │ feature │ 'megaslump' is not an │ │ │ │ │ accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/feature.json │ │ permafrost sediment │ 388 │ material │ 'permafrost sediment' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.githu │ │ │ │ │ b.io/AncientMetagenomeDir/ass │ │ │ │ │ ets/enums/material.json │ └─────────────────────┴─────────────┴──────────┴───────────────────────────────┘ The following type of errors were found: • DatasetValidationError ```

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ slump │ 385 │ feature │ 'slump' is not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ slump │ 386 │ feature │ 'slump' is not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ slump │ 384 │ feature │ 'slump' is not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ slump │ 387 │ feature │ 'slump' is not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ slump │ 388 │ feature │ 'slump' is not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ └─────────────────┴─────────────┴─────────┴────────────────────────────────────┘ The following type of errors were found: • DatasetValidationError ```

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json All is good, no errors were found !

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json All is good, no errors were found !

[ktozdogan]

@jfy133

Working on the library information now!

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I am going to have a look at other publications, but 'terrestrial' sounds good actually.

[jfy133]

guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

Oh wow... that's a bit pants. Ok fair enough... it won't be very 'findable' I guess, but it is what it is...

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━┩ │ AccuPrime Pfx │ 450 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 443 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 445 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 447 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ Illumina NovaSeq │ 451 │ instrument_model │ 'Illumina NovaSeq' is │ │ │ │ │ not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/instrument_model.jso │ │ │ │ │ n │ │ AccuPrime Pfx │ 446 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 442 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ Illumina NovaSeq │ 450 │ instrument_model │ 'Illumina NovaSeq' is │ │ │ │ │ not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/instrument_model.jso │ │ │ │ │ n │ │ Illumina NovaSeq │ 447 │ instrument_model │ 'Illumina NovaSeq' is │ │ │ │ │ not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/instrument_model.jso │ │ │ │ │ n │ │ AccuPrime Pfx │ 448 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 449 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ AccuPrime Pfx │ 444 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ │ Illumina NovaSeq │ 448 │ instrument_model │ 'Illumina NovaSeq' is │ │ │ │ │ not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/instrument_model.jso │ │ │ │ │ n │ │ Illumina NovaSeq │ 449 │ instrument_model │ 'Illumina NovaSeq' is │ │ │ │ │ not an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/instrument_model.jso │ │ │ │ │ n │ │ AccuPrime Pfx │ 451 │ library_polymerase │ 'AccuPrime Pfx' is not │ │ │ │ │ an accepted value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-communit │ │ │ │ │ y.github.io/AncientMet │ │ │ │ │ agenomeDir/assets/enum │ │ │ │ │ s/library_polymerase.j │ │ │ │ │ son │ └──────────────────┴─────────────┴────────────────────┴────────────────────────┘ The following type of errors were found: • DatasetValidationError ```

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━┩ │ AccuPrime Pfx │ 443 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 447 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 444 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 449 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 450 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ Illumina NovaSeq SP platform │ 448 │ instrument_mo… │ 'Illumina │ │ │ │ │ NovaSeq SP │ │ │ │ │ platform' is │ │ │ │ │ not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/in │ │ │ │ │ strument_model │ │ │ │ │ .json │ │ AccuPrime Pfx │ 451 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ Illumina NovaSeq SP platform │ 449 │ instrument_mo… │ 'Illumina │ │ │ │ │ NovaSeq SP │ │ │ │ │ platform' is │ │ │ │ │ not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/in │ │ │ │ │ strument_model │ │ │ │ │ .json │ │ Illumina NovaSeq SP platform │ 450 │ instrument_mo… │ 'Illumina │ │ │ │ │ NovaSeq SP │ │ │ │ │ platform' is │ │ │ │ │ not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/in │ │ │ │ │ strument_model │ │ │ │ │ .json │ │ AccuPrime Pfx │ 445 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ Illumina NovaSeq SP platform │ 451 │ instrument_mo… │ 'Illumina │ │ │ │ │ NovaSeq SP │ │ │ │ │ platform' is │ │ │ │ │ not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/in │ │ │ │ │ strument_model │ │ │ │ │ .json │ │ Illumina NovaSeq SP platform │ 447 │ instrument_mo… │ 'Illumina │ │ │ │ │ NovaSeq SP │ │ │ │ │ platform' is │ │ │ │ │ not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/in │ │ │ │ │ strument_model │ │ │ │ │ .json │ │ AccuPrime Pfx │ 446 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 442 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ │ AccuPrime Pfx │ 448 │ library_polym… │ 'AccuPrime │ │ │ │ │ Pfx' is not an │ │ │ │ │ accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam- │ │ │ │ │ community.gith │ │ │ │ │ ub.io/AncientM │ │ │ │ │ etagenomeDir/a │ │ │ │ │ ssets/enums/li │ │ │ │ │ brary_polymera │ │ │ │ │ se.json │ └──────────────────────────────┴─────────────┴────────────────┴────────────────┘ The following type of errors were found: • DatasetValidationError ```

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ terrestrial │ 385 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 384 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 388 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 387 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 386 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ └─────────────────┴─────────────┴─────────┴────────────────────────────────────┘ The following type of errors were found: • DatasetValidationError ```

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json

Errors were found, please unfold below to see errors:

``` Validation Errors were found ┏━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━┳━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Offending value ┃ Line number ┃ Column ┃ Error ┃ ┡━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━╇━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ terrestrial │ 387 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 384 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 385 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 386 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ │ terrestrial │ 388 │ feature │ 'terrestrial' is not an accepted │ │ │ │ │ value. │ │ │ │ │ Please check │ │ │ │ │ https://spaam-community.github.io/ │ │ │ │ │ AncientMetagenomeDir/assets/enums/ │ │ │ │ │ feature.json │ └─────────────────┴─────────────┴─────────┴────────────────────────────────────┘ The following type of errors were found: • DatasetValidationError ```

[ktozdogan]

* The site isn't really archaeological I think. Probably something like 'terrestrial' or something like would suffice (check other publications here, and try exploring ENVO: https://www.ebi.ac.uk/ols/). 

I couldn't find a term that would fit entirely there, the closest would be "terrigenous". Adding "slump" would be too specific, right? I think "terrestrial" is good, adding it to the list would be nice for these kinds of samples.

[jfy133]

* The site isn't really archaeological I think. Probably something like 'terrestrial' or something like would suffice (check other publications here, and try exploring ENVO: https://www.ebi.ac.uk/ols/). 

I couldn't find a term that would fit entirely there, the closest would be "terrigenous". Adding "slump" would be too specific, right? I think "terrestrial" is good, adding it to the list would be nice for these kinds of samples.

What about thermokarst: https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_03000085

https://en.wikipedia.org/wiki/Batagaika_crater

[ktozdogan]

* The site isn't really archaeological I think. Probably something like 'terrestrial' or something like would suffice (check other publications here, and try exploring ENVO: https://www.ebi.ac.uk/ols/). 

I couldn't find a term that would fit entirely there, the closest would be "terrigenous". Adding "slump" would be too specific, right? I think "terrestrial" is good, adding it to the list would be nice for these kinds of samples.

What about thermokarst: https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_03000085

https://en.wikipedia.org/wiki/Batagaika_crater

I think if it is not too specific in terms of keeping the terms more general, I would say we should go for it.

[jfy133]

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I can't actually find this table in their publication?! Which one is it?

[jfy133]

* The site isn't really archaeological I think. Probably something like 'terrestrial' or something like would suffice (check other publications here, and try exploring ENVO: https://www.ebi.ac.uk/ols/). 

I couldn't find a term that would fit entirely there, the closest would be "terrigenous". Adding "slump" would be too specific, right? I think "terrestrial" is good, adding it to the list would be nice for these kinds of samples.

What about thermokarst: https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FENVO_03000085 https://en.wikipedia.org/wiki/Batagaika_crater

I think if it is not too specific in terms of keeping the terms more general, I would say we should go for it.

No, in this case I think it's alright. I'm not so fussy about this particular column ;)

[jfy133]

Note: to add thermokarst you will need to make a fresh branch off of master, update the corresponding assets/enum, and open the PR

Then once that is merged, you can update this PR here with the correct term :)

[ktozdogan]

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I can't actually find this table in their publication?! Which one is it?

It is the edn3336-sup-0006-TableS3.xlsx file. And the tab is called "Shotgun_sequencing_statistics".

[jfy133]

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I can't actually find this table in their publication?! Which one is it?

It is the edn3336-sup-0006-TableS3.xlsx file. And the tab is called "Shotgun_sequencing_statistics".

Except these are not sequence as in core-sequence but literally the 'DNA sequencing' IDs, so B17 and B17- is the core-sequence samples they have derived from, and `APMG-` will be the library IDs. S oyou will need to update the sample table

You can see this because the extraction blanks also have a Seq_ID withh an APMG code

[ktozdogan]

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I can't actually find this table in their publication?! Which one is it?

It is the edn3336-sup-0006-TableS3.xlsx file. And the tab is called "Shotgun_sequencing_statistics".

Except these are not sequence as in core-sequence but literally the 'DNA sequencing' IDs, so B17 and B17- is the core-sequence samples they have derived from, and `APMG-` will be the library IDs. S oyou will need to update the sample table

You can see this because the extraction blanks also have a Seq_ID withh an APMG code

Oh okay, now I see. So the sequence_name should be the core ID, the sample name is the individual ID for the sample derived from the core ID, and the library ID would be the sequence ID, APMG in this case? If yes, I got the sequence_name all wrong then. I thought it was the library ID. I will update them. Sorry about that. :)

[jfy133]

APMG IDs are the ones they assigned for the libraries. I guess they mention them first time on the supplementary table about the shotgun sequencing and used those IDs on ENA as well (eg 210810_A00902_A_L1-2_APMG-36-3_R1.fastq.gz).

I can't actually find this table in their publication?! Which one is it?

It is the edn3336-sup-0006-TableS3.xlsx file. And the tab is called "Shotgun_sequencing_statistics".

Except these are not sequence as in core-sequence but literally the 'DNA sequencing' IDs, so B17 and B17- is the core-sequence samples they have derived from, and `APMG-` will be the library IDs. S oyou will need to update the sample table

You can see this because the extraction blanks also have a Seq_ID withh an APMG code

Oh okay, now I see. So the sequence_name should be the core ID, the sample name is the individual ID for the sample derived from the core ID, and the library ID would be the sequence ID, APMG in this case? If yes, I got the sequence_name all wrong then. I thought it was the library ID. I will update them. Sorry about that. :)

Yes exactly! Sorry that wasn't clear. We don't point to any 'DNA' level stuff in the sample table

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json All is good, no errors were found !

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json All is good, no errors were found !

[github-actions[bot]]

ancientMetagenomeDirCheck, version 1.3

Ancient Metagenome Host Associated Samples

Checking ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s.tsv against schema ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_sample s_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Samples

Checking ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples.tsv against schema ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_sa mples_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Samples

Checking ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples. tsv against schema ancientmetagenome-environmental/samples/ancientmetagenome-environmentalsamples schema.json All is good, no errors were found !

Ancient Metagenome Host Associated Libraries

Checking ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries.tsv against schema ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libr aries_schema.json All is good, no errors were found !

Ancient Single Genome Host Associated Libraries

Checking ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries.tsv against schema ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated libraries_schema.json All is good, no errors were found !

Ancient Metagenome Environmental Libraries

Checking ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies.tsv against schema ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_librar ies_schema.json All is good, no errors were found !