SPARC-FAIR-Codeathon 2024-team-2 issues

SPARC-FAIR-Codeathon / 2024-team-2

A python tool to automatically assemble models and tools into workflows, for processing and interpreting SPARC datasets in accordance with FAIR principles

https://pypi.org/project/sparc-assemble/

Apache License 2.0

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issues

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update readme tutorial links and update the name of tutorial 3 folder.

#83 JialiXu12 closed 4 weeks ago
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updated tut 3

#82 chinchien-lin closed 4 weeks ago
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Solve invalid notebook

#81 MathildeVerlyck closed 4 weeks ago
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refactor: rename tutorial folders

#80 chinchien-lin closed 4 weeks ago
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feat: update tutorial 1

#79 chinchien-lin closed 4 weeks ago
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Tutorial 6 add link

#78 MathildeVerlyck closed 4 weeks ago
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Tutorial 5 running + SDS

#77 MathildeVerlyck closed 4 weeks ago
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build: version 0.1.9

#76 chinchien-lin closed 4 weeks ago
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5 and 6 update

#75 MathildeVerlyck closed 4 weeks ago
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update tutorial 4, related example, and kg

#74 JialiXu12 closed 4 weeks ago
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build: v0.1.5

#73 chinchien-lin closed 4 weeks ago
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Important change (small change) assembler and tutorial 5 WIP

#72 MathildeVerlyck closed 4 weeks ago
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Update README.md

#71 PrasadBabarendaGamage closed 4 weeks ago
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Finished README

#70 PrasadBabarendaGamage closed 4 weeks ago
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README

#69 chinchien-lin closed 4 weeks ago
1
Fix: add model to KG.

#68 chinchien-lin closed 4 weeks ago
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Tutorial 2 final version running

#67 MathildeVerlyck closed 4 weeks ago
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fix: tool 2 works

#66 chinchien-lin closed 4 weeks ago
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fix: tool 1 works

#65 chinchien-lin closed 4 weeks ago
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Tutorial 5 updated

#64 MathildeVerlyck closed 4 weeks ago
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media release form

#63 chinchien-lin closed 4 weeks ago
1
examples and tutorials

#62 JialiXu12 closed 4 weeks ago
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First commit jupyter tutorial 1

#61 MaxDangVu136 closed 4 weeks ago
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Tutorial 2 and 5 and update assembler

#60 MathildeVerlyck closed 4 weeks ago
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chore: add example_add_biomodels_model_to_knowledge_graph.py

#59 chinchien-lin closed 1 month ago
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build: bump up version to 0.1.3

#58 chinchien-lin closed 1 month ago
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feat: update add model API

#57 chinchien-lin closed 1 month ago
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fix: update python tools so they can be run

#56 chinchien-lin closed 1 month ago
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chore: add tools in python and cwl

#55 MaxDangVu136 closed 1 month ago
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chore: add an example module

#54 chinchien-lin closed 1 month ago
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Final release of the code and API for the codeathon

#53 chinchien-lin closed 4 weeks ago
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Disable warnning messages

#52 chinchien-lin closed 4 weeks ago
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feat: allow adding model to KG

#51 chinchien-lin closed 1 month ago
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fix: missing the default ontology file

#50 chinchien-lin closed 1 month ago
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zenodo

#49 chinchien-lin closed 4 weeks ago
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refactor: refactor exmaples

#48 chinchien-lin closed 1 month ago
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feature - saving tool in SDS

#47 chinchien-lin closed 4 weeks ago
2
build: v0.1.0 released on PyPI

#46 chinchien-lin closed 1 month ago
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cwl files for python tools

#45 MaxDangVu136 closed 1 month ago
1
add tool listing after KG creation

#44 MathildeVerlyck closed 1 month ago
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Add tool listing after KG creation

#43 MathildeVerlyck closed 1 month ago
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fix(setup.py): fix missing import

#42 chinchien-lin closed 1 month ago
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build(setup.py): updating setup.py

#41 chinchien-lin closed 1 month ago
1
Deployment - seting up setup.py

#40 chinchien-lin closed 1 month ago
1
Remove superceded files

#39 MaxDangVu136 closed 1 month ago
0
Tutorial 6 - Assembling workflows automatically using natural language processing

#38 chinchien-lin closed 4 weeks ago
1
Tutorial 4 - Adding non-SPARC tools and models to the knowledge graph

#37 chinchien-lin closed 4 weeks ago
1
Update tools for extracting data from SDS dataset

#36 MaxDangVu136 closed 1 month ago
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refactor: kg class

#35 chinchien-lin closed 1 month ago
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create dummy tools

#34 chinchien-lin closed 1 month ago
0