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SPARC-FAIR-Codeathon
/
2024-team-2
A python tool to automatically assemble models and tools into workflows, for processing and interpreting SPARC datasets in accordance with FAIR principles
https://pypi.org/project/sparc-assemble/
Apache License 2.0
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update readme tutorial links and update the name of tutorial 3 folder.
#83
JialiXu12
closed
2 months ago
0
updated tut 3
#82
chinchien-lin
closed
2 months ago
0
Solve invalid notebook
#81
MathildeVerlyck
closed
2 months ago
0
refactor: rename tutorial folders
#80
chinchien-lin
closed
2 months ago
0
feat: update tutorial 1
#79
chinchien-lin
closed
2 months ago
0
Tutorial 6 add link
#78
MathildeVerlyck
closed
2 months ago
0
Tutorial 5 running + SDS
#77
MathildeVerlyck
closed
2 months ago
0
build: version 0.1.9
#76
chinchien-lin
closed
2 months ago
0
5 and 6 update
#75
MathildeVerlyck
closed
2 months ago
0
update tutorial 4, related example, and kg
#74
JialiXu12
closed
2 months ago
0
build: v0.1.5
#73
chinchien-lin
closed
2 months ago
0
Important change (small change) assembler and tutorial 5 WIP
#72
MathildeVerlyck
closed
2 months ago
0
Update README.md
#71
PrasadBabarendaGamage
closed
2 months ago
0
Finished README
#70
PrasadBabarendaGamage
closed
2 months ago
0
README
#69
chinchien-lin
closed
2 months ago
1
Fix: add model to KG.
#68
chinchien-lin
closed
2 months ago
0
Tutorial 2 final version running
#67
MathildeVerlyck
closed
2 months ago
0
fix: tool 2 works
#66
chinchien-lin
closed
2 months ago
0
fix: tool 1 works
#65
chinchien-lin
closed
2 months ago
0
Tutorial 5 updated
#64
MathildeVerlyck
closed
2 months ago
0
media release form
#63
chinchien-lin
closed
2 months ago
1
examples and tutorials
#62
JialiXu12
closed
2 months ago
0
First commit jupyter tutorial 1
#61
MaxDangVu136
closed
2 months ago
0
Tutorial 2 and 5 and update assembler
#60
MathildeVerlyck
closed
2 months ago
0
chore: add example_add_biomodels_model_to_knowledge_graph.py
#59
chinchien-lin
closed
2 months ago
0
build: bump up version to 0.1.3
#58
chinchien-lin
closed
2 months ago
0
feat: update add model API
#57
chinchien-lin
closed
2 months ago
0
fix: update python tools so they can be run
#56
chinchien-lin
closed
2 months ago
0
chore: add tools in python and cwl
#55
MaxDangVu136
closed
2 months ago
0
chore: add an example module
#54
chinchien-lin
closed
2 months ago
0
Final release of the code and API for the codeathon
#53
chinchien-lin
closed
2 months ago
0
Disable warnning messages
#52
chinchien-lin
closed
2 months ago
0
feat: allow adding model to KG
#51
chinchien-lin
closed
2 months ago
0
fix: missing the default ontology file
#50
chinchien-lin
closed
2 months ago
0
zenodo
#49
chinchien-lin
closed
2 months ago
0
refactor: refactor exmaples
#48
chinchien-lin
closed
2 months ago
0
feature - saving tool in SDS
#47
chinchien-lin
closed
2 months ago
2
build: v0.1.0 released on PyPI
#46
chinchien-lin
closed
2 months ago
0
cwl files for python tools
#45
MaxDangVu136
closed
2 months ago
1
add tool listing after KG creation
#44
MathildeVerlyck
closed
2 months ago
0
Add tool listing after KG creation
#43
MathildeVerlyck
closed
2 months ago
0
fix(setup.py): fix missing import
#42
chinchien-lin
closed
2 months ago
0
build(setup.py): updating setup.py
#41
chinchien-lin
closed
2 months ago
1
Deployment - seting up setup.py
#40
chinchien-lin
closed
2 months ago
1
Remove superceded files
#39
MaxDangVu136
closed
2 months ago
0
Tutorial 6 - Assembling workflows automatically using natural language processing
#38
chinchien-lin
closed
2 months ago
1
Tutorial 4 - Adding non-SPARC tools and models to the knowledge graph
#37
chinchien-lin
closed
2 months ago
1
Update tools for extracting data from SDS dataset
#36
MaxDangVu136
closed
2 months ago
0
refactor: kg class
#35
chinchien-lin
closed
2 months ago
0
create dummy tools
#34
chinchien-lin
closed
2 months ago
0
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