CWL workflow - Create example with cwltool

SPARC-FAIR-Codeathon / sparc-flow

A Python tool to describe and run tools and workflows for processing SPARC datasets in accordance with FAIR principles.

Apache License 2.0

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Closed chinchien-lin closed 1 year ago

chinchien-lin commented 1 year ago

[x] Create example in python on how to create/wrap a tool (workflow step) description in .cwl. The workflow step could just be a python script that prints "hello world"

LinkunGao commented 1 year ago

step 2:

[ ] have look at dockstore with cwl
[ ] have a look at o2S2PARC
- [ ] run a simple python script in o2S2PARC platform