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SPARC-FAIR-Codeathon
/
sparc-flow
A Python tool to describe and run tools and workflows for processing SPARC datasets in accordance with FAIR principles.
Apache License 2.0
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Example CWL Workflow that Downloads and Processes a Sparc Dataset and Outputs a Text File
#53
frenchmatthew
closed
1 year ago
0
Presentation - Slides & recording
#52
PrasadBabarendaGamage
closed
1 year ago
0
Manuscript - Skeleton
#51
PrasadBabarendaGamage
closed
1 year ago
0
Readme - Mockup pages/screenshots for the Workflows and Tool for the SPARC Portal
#50
chinchien-lin
opened
1 year ago
0
Tutorial 7 (TBC)
#49
chinchien-lin
closed
1 year ago
0
Tutorial 6
#48
chinchien-lin
closed
1 year ago
0
Tutorial 5
#47
chinchien-lin
closed
1 year ago
0
Tutorial 4
#46
chinchien-lin
closed
1 year ago
0
Tutorial 3
#45
chinchien-lin
closed
1 year ago
0
Tutorial 2
#44
chinchien-lin
closed
1 year ago
0
Tutorial 1
#43
chinchien-lin
closed
1 year ago
0
Example - dockstore run CWL locally
#42
LinkunGao
closed
1 year ago
0
Tutorials - Add descriptions
#41
PrasadBabarendaGamage
closed
1 year ago
0
Tutorials - Add descriptions
#40
PrasadBabarendaGamage
closed
1 year ago
0
Tutorial 1 - Export results from Michael's example python script to an SDS dataset
#39
PrasadBabarendaGamage
closed
1 year ago
2
Guidelines - Convert Jiali's FAIR table to png and insert in readme
#38
PrasadBabarendaGamage
opened
1 year ago
0
Bug fix - Dependency issue on Tutorial 1
#37
chinchien-lin
closed
1 year ago
0
Tutorials - Dependency issue on Tutorial 1
#36
chinchien-lin
closed
1 year ago
0
API - Move workflow API example from tests folder to examples folder
#35
chinchien-lin
closed
1 year ago
0
CWL workflow - run on O2sparc
#34
chinchien-lin
closed
1 year ago
0
CWL workflow - run the clould with dockersotre
#33
chinchien-lin
opened
1 year ago
1
CWL workflow - run locally with dockstore
#32
chinchien-lin
closed
1 year ago
0
CWL workflow - run locally with cwltool
#31
chinchien-lin
closed
1 year ago
0
Example CWL Arithmetic Workflow for Testing API
#30
frenchmatthew
closed
1 year ago
0
API - Skeleton
#29
frenchmatthew
closed
1 year ago
0
Tutorials - Find example dataset
#28
Moffhan
closed
1 year ago
0
API - import code to SDS
#27
chinchien-lin
closed
1 year ago
0
Readme - Sparc-flow preliminary FAIRness assessment
#26
PrasadBabarendaGamage
closed
1 year ago
0
API - Skeleton
#25
frenchmatthew
closed
1 year ago
0
API - Example CWL Arithmetic Workflow for Testing API
#24
frenchmatthew
closed
1 year ago
1
Readme - Sparc-flow preliminary FAIRness assessment
#23
PrasadBabarendaGamage
closed
1 year ago
0
Readme - Motivation
#22
PrasadBabarendaGamage
closed
1 year ago
0
Readme - Skeleton
#21
PrasadBabarendaGamage
closed
1 year ago
0
Ex/helloworld
#20
LinkunGao
closed
1 year ago
0
Update README.md and create a Guidelines document.
#19
JialiXu12
closed
1 year ago
0
Add SPARC Flow Folder Structure
#18
frenchmatthew
closed
1 year ago
1
Readme - Skeleton
#17
PrasadBabarendaGamage
closed
1 year ago
0
Update README.md
#16
chinchien-lin
closed
1 year ago
0
Repo inital setup
#15
chinchien-lin
closed
1 year ago
0
Guidelines - Investigate
#14
PrasadBabarendaGamage
closed
1 year ago
1
Tutorial - Creating tool descriptions in SDS format
#13
chinchien-lin
closed
1 year ago
1
Guidelines - Add best practices to tutorials
#12
chinchien-lin
closed
1 year ago
0
Tutorial - O2sparc
#11
chinchien-lin
closed
1 year ago
0
Tutorial - Dockstore
#10
chinchien-lin
closed
1 year ago
1
Tutorial - Running a workflow locally
#9
chinchien-lin
closed
1 year ago
1
Tutorial - Creating workflow descriptions in SDS format
#8
chinchien-lin
closed
1 year ago
1
Tutorial 1 - Access example dataset with sparc-me and run it's python code
#7
chinchien-lin
closed
1 year ago
1
API - documentation
#6
chinchien-lin
opened
1 year ago
1
API - Implement functions for creating workflows
#5
chinchien-lin
closed
1 year ago
1
API - Implement functions for creating tools
#4
chinchien-lin
closed
1 year ago
0
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