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SPARC-FAIR-Codeathon / sparc-me

A python tool to explore, enhance, and expand SPARC datasets and their descriptions
Apache License 2.0
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Tutorial 5 - Converting BIDS datasets to SDS datasets #6

Open PrasadBabarendaGamage opened 2 years ago

PrasadBabarendaGamage commented 2 years ago
  1. Run through a tutorial on how to use pybids
  2. Build upon sparc-me base example to: a. define fields in the dataset_description category. c. export the sds dataset.

Some of the fields will need be specified in the python script. e.g. project_name = "name". etc

Mvp1: Convert subj from bids to sds Mvp2: Convert metadata from bids to sds

PrasadBabarendaGamage commented 2 years ago

@haribalankumar Need SDSvalidator after BIDSconversion

Chinchien is currently working on providing the validator in #14

PrasadBabarendaGamage commented 2 years ago

@haribalankumar Chinchien has competed #14 and added a SDS schema validation example here: https://github.com/SPARC-FAIR-Codeathon/sparc-me/blob/main/examples/validate_schema.py

Would be great to have a look at validation after the MVP of BIDS to SDS is ready.