updates docs; add half-duration check; fixes initialization & ADIOS routine names

[buildbot-princeton]

The files changed require a buildbot test. Buildbot has started.

[codecov-commenter]

Codecov Report

Base: 42.44% // Head: 45.52% // Increases project coverage by +3.07% :tada:

Coverage data is based on head (b419f80) compared to base (f406377). Patch coverage: 25.80% of modified lines in pull request are covered.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## devel #1566 +/- ## ========================================== + Coverage 42.44% 45.52% +3.07% ========================================== Files 249 249 Lines 55567 55570 +3 ========================================== + Hits 23588 25297 +1709 + Misses 31979 30273 -1706 ``` | [Impacted Files](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM) | Coverage Δ | | |---|---|---| | [src/generate\_databases/get\_model.F90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL2dlbmVyYXRlX2RhdGFiYXNlcy9nZXRfbW9kZWwuRjkw) | `81.81% <ø> (ø)` | | | [src/shared/adios\_method\_stubs.c](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NoYXJlZC9hZGlvc19tZXRob2Rfc3R1YnMuYw==) | `0.00% <0.00%> (ø)` | | | [src/specfem3D/compute\_add\_sources\_viscoelastic.F90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NwZWNmZW0zRC9jb21wdXRlX2FkZF9zb3VyY2VzX3Zpc2NvZWxhc3RpYy5GOTA=) | `40.46% <ø> (+9.24%)` | :arrow_up: | | [src/specfem3D/noise\_tomography.f90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NwZWNmZW0zRC9ub2lzZV90b21vZ3JhcGh5LmY5MA==) | `71.60% <ø> (+71.60%)` | :arrow_up: | | [src/specfem3D/read\_external\_stf.f90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NwZWNmZW0zRC9yZWFkX2V4dGVybmFsX3N0Zi5mOTA=) | `0.00% <0.00%> (ø)` | | | [src/tomography/save\_external\_bin\_m\_up.f90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3RvbW9ncmFwaHkvc2F2ZV9leHRlcm5hbF9iaW5fbV91cC5mOTA=) | `0.00% <ø> (ø)` | | | [src/specfem3D/save\_adjoint\_kernels.f90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NwZWNmZW0zRC9zYXZlX2Fkam9pbnRfa2VybmVscy5mOTA=) | `22.76% <6.25%> (+20.00%)` | :arrow_up: | | [src/generate\_databases/create\_regions\_mesh.f90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL2dlbmVyYXRlX2RhdGFiYXNlcy9jcmVhdGVfcmVnaW9uc19tZXNoLmY5MA==) | `79.67% <80.00%> (+0.27%)` | :arrow_up: | | [src/generate\_databases/save\_arrays\_solver.F90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL2dlbmVyYXRlX2RhdGFiYXNlcy9zYXZlX2FycmF5c19zb2x2ZXIuRjkw) | `98.71% <100.00%> (ø)` | | | [src/shared/read\_parameter\_file.F90](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM#diff-c3JjL3NoYXJlZC9yZWFkX3BhcmFtZXRlcl9maWxlLkY5MA==) | `51.00% <100.00%> (+0.43%)` | :arrow_up: | | ... and [49 more](https://codecov.io/gh/SPECFEM/specfem3d/pull/1566/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=SPECFEM)

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[buildbot-princeton]

Your changes passed the buildbot test. See build 937.

[danielpeter]

accept

On 26 Nov 2022, at 11:09 AM, buildbot-princeton @.**@.>> wrote:

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